DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sax and YDA

DIOPT Version :9

Sequence 1:NP_001246193.1 Gene:sax / 35731 FlyBaseID:FBgn0003317 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001319310.1 Gene:YDA / 842674 AraportID:AT1G63700 Length:883 Species:Arabidopsis thaliana


Alignment Length:624 Identity:138/624 - (22%)
Similarity:217/624 - (34%) Gaps:187/624 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 HLREDIPD-----LDMELSSASSAHLNGKELPAVPQNSVQTHPRRHIKSKRRMKRRYKCYSCEPP 85
            |....|||     .|...:|.||    |..:..:|.:|:.:.               ....||..
plant   124 HGATSIPDNTGAEPDFATASVSS----GSSVGDIPSDSLLSP---------------LASDCENG 169

  Fly    86 CRDPYEFT------HTCQNAIQCWKSRTRDADGQVQESRGCSTSPDQLPM--------------- 129
            .|.|...:      |:.:|:.:.:|.       ...::|..|.||.:.|:               
plant   170 NRTPVNISSRDQSMHSNKNSAEMFKP-------VPNKNRILSASPRRRPLGTHVKNLQIPQRDLV 227

  Fly   130 ICSQNSLKINGPSKRNTGKFV----------------NVVCCAGDYCNE-------------GDF 165
            :||.....::.||:.....|:                :|.......|:.             ||.
plant   228 LCSAPDSLLSSPSRSPMRSFIPDQVSNHGLLISKPYSDVSLLGSGQCSSPGSGYNSGNNSIGGDM 292

  Fly   166 ------------PELLPFDSNDVTVITADTSSISKMLVAVLGPFLVIALLGAVTIFFIRRSHRKR 218
                        ||..|..|..:| ....:|.|....|..|.|....:..|:.|    ||....|
plant   293 ATQLFWPQSRCSPECSPVPSPRMT-SPGPSSRIQSGAVTPLHPRAGGSTTGSPT----RRLDDNR 352

  Fly   219 LAASRTKQDPEAYLVNDELLRATSAGDSTLREYLQHSVTSGSGSGLPLLVQRTLA-----KQVTL 278
            ..:.|....|        ||.:.:...|.    ...:.||.|....|...:.|::     |:..|
plant   353 QQSHRLPLPP--------LLISNTCPFSP----TYSAATSPSVPRSPARAEATVSPGSRWKKGRL 405

  Fly   279 IECIGRGKYGEVWRG--HWHGESIAVKIFFSRDEESWKRET------EIYSTILLRHENILGFIG 335
               :|.|.:|.|:.|  ...||..|:|......::...||:      ||.....|||:||:.:.|
plant   406 ---LGMGSFGHVYLGFNSESGEMCAMKEVTLCSDDPKSRESAQQLGQEISVLSRLRHQNIVQYYG 467

  Fly   336 SDMTSRNSCTQLWLMTHYYPLGSLFDHL------NRNALSHNDMVWICLSIANGLVHLHTEIFGK 394
            |:...    .:|::...|...||::..|      ..||:.:...     .|.:||.:||.:    
plant   468 SETVD----DKLYIYLEYVSGGSIYKLLQEYGQFGENAIRNYTQ-----QILSGLAYLHAK---- 519

  Fly   395 QGKPAMAHRDLKSKNILVTSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTKRYMAPEVLDESI 459
                ...|||:|..||||..:|...:||||:|   .|:|.|  .|.....|:..:|||||:..|.
plant   520 ----NTVHRDIKGANILVDPHGRVKVADFGMA---KHITAQ--SGPLSFKGSPYWMAPEVIKNSN 575

  Fly   460 DLECFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKVPF--YDVVPMDPSFEDMRKVVCIDNYR 522
            ....     ..||::.|..:.|:...          |.|:  |:.||.      |.|   |.|.:
plant   576 GSNL-----AVDIWSLGCTVLEMATT----------KPPWSQYEGVPA------MFK---IGNSK 616

  Fly   523 --PSIPNRWSSDSLMTGMSKLMKECWHQNPDVRLPALRI 559
              |.||:..|.:.     ...:::|..:||..|..|.::
plant   617 ELPDIPDHLSEEG-----KDFVRKCLQRNPANRPTAAQL 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
saxNP_001246193.1 Activin_recp 77..168 CDD:279413 22/152 (14%)
TM_EGFR-like 182..218 CDD:213052 9/35 (26%)
TGF_beta_GS 247..274 CDD:285687 5/31 (16%)
STKc_ACVR1_ALK1 270..567 CDD:271044 82/313 (26%)
TyrKc 276..553 CDD:197581 78/294 (27%)
YDANP_001319310.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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