DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and TDH2

DIOPT Version :9

Sequence 1:NP_001033936.1 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_012542.1 Gene:TDH2 / 853465 SGDID:S000003769 Length:332 Species:Saccharomyces cerevisiae


Alignment Length:329 Identity:211/329 - (64%)
Similarity:263/329 - (79%) Gaps:1/329 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKIGINGFGRIGRLVLRAAID-KGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFL 64
            |.::.|||||||||||:|.|:. |...|||:|||||..:|..|:||:||||||:.|.|:.:...:
Yeast     1 MVRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGEVSHDDKHI 65

  Fly    65 VVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            :|:|.||..|.||||||:.|||...:..::|||||..:|.|..|:..|||||:|:|||:.|||||
Yeast    66 IVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFV 130

  Fly   130 CGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||.:.|:.|:|:||||||||||||||||||||.|.|.||||||||:.|||||||||||.|.||
Yeast   131 MGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSMTATQKTVDGPSHKDWR 195

  Fly   195 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKV 259
            .||.|:.||||::||||||||||:|.|.||||||||||||.:||||||||:|.|..||||||..|
Yeast   196 GGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVV 260

  Fly   260 EEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            :.|::|.|||:||||::.|||:||..|::||:|||.|||.|:.|||||:||||||:|||.||:||
Yeast   261 KAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDL 325

  Fly   325 IKYM 328
            ::::
Yeast   326 VEHV 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_001033936.1 GapA 1..332 CDD:223135 211/329 (64%)
Gp_dh_N 3..149 CDD:278473 80/146 (55%)
Gp_dh_C 154..311 CDD:280894 112/156 (72%)
TDH2NP_012542.1 PLN02272 <2..330 CDD:177912 210/328 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346627
Domainoid 1 1.000 235 1.000 Domainoid score I392
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H107053
Inparanoid 1 1.050 443 1.000 Inparanoid score I258
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53863
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm9221
orthoMCL 1 0.900 - - OOG6_100218
Panther 1 1.100 - - O PTHR10836
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X175
TreeFam 1 0.960 - -
1413.760

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