DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and GAPCP-1

DIOPT Version :9

Sequence 1:NP_001033936.1 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_178071.1 Gene:GAPCP-1 / 844291 AraportID:AT1G79530 Length:422 Species:Arabidopsis thaliana


Alignment Length:329 Identity:234/329 - (71%)
Similarity:278/329 - (84%) Gaps:2/329 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SKIGINGFGRIGRLVLRAAIDK-GASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFL 64
            :|:||||||||||||||.|..: ...||||||||||..||.|:.|:|||||.|||:: ..:...|
plant    87 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFKGSINVIDDSTL 151

  Fly    65 VVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            .:||:|:.|.|:|||:.|.||..||:|||||:|||||:.||::||||||||||||||||||||||
plant   152 EINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKVIISAPSADAPMFV 216

  Fly   130 CGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||...|.|:|.:|||||||||||||||||:::.|.|:|||||||||||||||||||||.|.||
plant   217 VGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWR 281

  Fly   195 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKV 259
            .||||:|||||::||||||||||:|.||||||||||||||.||||||||.||.|||:|:::||.:
plant   282 GGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSNVSVVDLTCRLEKGASYEDVKAAI 346

  Fly   260 EEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            :.||:||||||||||||:|||.||..|:.||:|||.|||.|:..||||:||||||:||||||:||
plant   347 KHASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDANAGIGLSKSFVKLVSWYDNEWGYSNRVLDL 411

  Fly   325 IKYM 328
            |::|
plant   412 IEHM 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_001033936.1 GapA 1..332 CDD:223135 234/329 (71%)
Gp_dh_N 3..149 CDD:278473 96/147 (65%)
Gp_dh_C 154..311 CDD:280894 117/156 (75%)
GAPCP-1NP_178071.1 PLN02272 1..422 CDD:177912 234/329 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 246 1.000 Domainoid score I544
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 479 1.000 Inparanoid score I339
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D945145at2759
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm1061
orthoMCL 1 0.900 - - OOG6_100218
Panther 1 1.100 - - O PTHR10836
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X175
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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