DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and GAPC1

DIOPT Version :9

Sequence 1:NP_001033936.1 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_187062.1 Gene:GAPC1 / 819567 AraportID:AT3G04120 Length:338 Species:Arabidopsis thaliana


Alignment Length:329 Identity:227/329 - (68%)
Similarity:269/329 - (81%) Gaps:3/329 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIGINGFGRIGRLVLRAAIDK-GASVVAVNDPFIDVNYMVYLFKFDSTHGRFK-GTVAAEGGFLV 65
            :|||||||||||||.|..:.: ...:||||||||...||.|:||:||.||::| ..:..:....:
plant     7 RIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTL 71

  Fly    66 VNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            :.|:| :|||..|:|.:|.||.|||:||||||||||..|||:.|||||||||:|||||.||||||
plant    72 LFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFV 136

  Fly   130 CGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||...|..|:.:||||||||||||||||||||.|.||||||||||:.|||||||||||.|.||
plant   137 VGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWR 201

  Fly   195 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKV 259
            .||.|:.||||::||||||||||:||||||||||:|||||.:||||||||||.|.|||||||..:
plant   202 GGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAI 266

  Fly   260 EEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            :|.|:|.||||||||:::||||||..|..||:|||||||:|:||||||:||||||:|||:||:||
plant   267 KEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331

  Fly   325 IKYM 328
            |.:|
plant   332 IVHM 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_001033936.1 GapA 1..332 CDD:223135 227/329 (69%)
Gp_dh_N 3..149 CDD:278473 87/148 (59%)
Gp_dh_C 154..311 CDD:280894 120/156 (77%)
GAPC1NP_187062.1 PLN02358 1..338 CDD:165999 227/329 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 246 1.000 Domainoid score I544
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 479 1.000 Inparanoid score I339
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D945145at2759
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm1061
orthoMCL 1 0.900 - - OOG6_100218
Panther 1 1.100 - - O PTHR10836
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X175
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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