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Protein Alignment Gapdh1 and Gapdhs

DIOPT Version :9

Sequence 1:	NP_001033936.1	Gene:	Gapdh1 / 35728	FlyBaseID:	FBgn0001091	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_076454.1	Gene:	Gapdhs / 66020	RGDID:	620150	Length:	432	Species:	Rattus norvegicus

Alignment Length:	330	Identity:	228/330 - (69%)
Similarity:	273/330 - (82%)	Gaps:	1/330 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 IGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFLVVNG 68
            :||||||||||||||..::||..||||||||||..||||:||:||||||:||||..:.|.|||:.
  Rat   102 VGINGFGRIGRLVLRVCMEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEHKNGRLVVDN 166

  Fly    69 QKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVN 133
            .:|.||..::|..|.|:|.|..||||:|||:.:|:.||.|:..||::||::|||.||||.|.|||
  Rat   167 LEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVN 231

  Fly   134 LDAYSP-DMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGR 197
            ...|:| .|.|||||||||||||||||||::.|.|||||||||||.|||||||||||.|.||.||
  Rat   232 EKDYNPGSMTVVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGGR 296

  Fly   198 GAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKVEEA 262
            ||.|||||::||||||||||||.|||||||||||||||||||||||.||.:.|:|..||..|:.|
  Rat   297 GAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAA 361

  Fly   263 SKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKY 327
            :|||:.|||.||:::||||||..|:|||:|||||||:|||.||||:||||||:|||:||:||::|
  Rat   362 AKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRY 426

  Fly   328 MQSKD 332
            |.|::
  Rat   427 MFSRE 431

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.