DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and Pnma8b

DIOPT Version :10

Sequence 1:NP_525108.2 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001093106.1 Gene:Pnma8b / 434128 MGIID:3645856 Length:661 Species:Mus musculus


Alignment Length:228 Identity:50/228 - (21%)
Similarity:86/228 - (37%) Gaps:64/228 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 DKASTHLKGG--AKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCTTNCLAPLAKVI---- 161
            |..|..|:.|  .|:|:      |:|.||..|   ||:..    ::.|.....| .:|.||    
Mouse   330 DSDSESLENGEHGKEVM------DSPEFVAIV---AYTDP----ADPSAREEML-KIASVIETLG 380

  Fly   162 ----NDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT---GAAKAVGKVIP 219
                .|..:::..:::.:      .|...||..|:...||.....::..|.   ...:.:..:..
Mouse   381 WGDKKDKKDVLPQVLSVM------AKDTSGPRVKVEEAGRQVDAMVLRKAEEDGNLLECISTLAE 439

  Fly   220 ALN---GKLTGM----AFRVPTPNVSVVDLTVRLGKGATYDEIKA-KVEEASK------------ 264
            |.|   ||.:|:    .:........:::|...|   |..|.::| :.||||:            
Mouse   440 AENCPKGKKSGLGLLRGWTAEGHQGGLLELVALL---AAQDMVEAVREEEASRWGSGGSGGRKCD 501

  Fly   265 ---GPLKGILGY--TDEEVVS---TDFFSDTHS 289
               |.|..:|.:  :.|.:.|   :|..|||.|
Mouse   502 HSQGGLSEVLAFLASQENLESNEESDEDSDTES 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_525108.2 PLN02272 <2..328 CDD:177912 50/228 (22%)
Pnma8bNP_001093106.1 PNMA 1..>114 CDD:464357
Blue background indicates that the domain is not in the aligned region.

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