DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and gapdh

DIOPT Version :9

Sequence 1:NP_001033936.1 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001108586.1 Gene:gapdh / 317743 ZFINID:ZDB-GENE-030115-1 Length:333 Species:Danio rerio


Alignment Length:333 Identity:255/333 - (76%)
Similarity:289/333 - (86%) Gaps:1/333 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKIGINGFGRIGRLVLRAA-IDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFL 64
            |.|:||||||||||||.||| :.|...:||:||||||::||||:|::|||||::||.|.||||.|
Zfish     1 MVKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYKGEVKAEGGKL 65

  Fly    65 VVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            |::|..|||:||||||||.|..|||.||||||||||||:|||.|:|||||:||||||||||||||
Zfish    66 VIDGHAITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFV 130

  Fly   130 CGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||.:.|...:.|||||||||||||||||||||||.||||||:||||.||||||||||||||||
Zfish   131 MGVNHEKYDNSLTVVSNASCTTNCLAPLAKVINDNFVIVEGLMSTVHAITATQKTVDGPSGKLWR 195

  Fly   195 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKV 259
            |||||:||||||:||||||||||||.||||||||||||||||||||||||||.|.|.|||||..|
Zfish   196 DGRGASQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTVRLEKPAKYDEIKKVV 260

  Fly   260 EEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            :.|:.||:|||||||:.:||||||..|..||:|||.|||:|||.||||::||||||||||||.||
Zfish   261 KAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDL 325

  Fly   325 IKYMQSKD 332
            :.:|.||:
Zfish   326 MAHMASKE 333

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_001033936.1 GapA 1..332 CDD:223135 254/331 (77%)
Gp_dh_N 3..149 CDD:278473 104/146 (71%)
Gp_dh_C 154..311 CDD:280894 127/156 (81%)
gapdhNP_001108586.1 GapA 1..333 CDD:223135 254/331 (77%)
Gp_dh_N 2..150 CDD:278473 104/147 (71%)
Glyceraldehyde 3-phosphate binding. /evidence=ECO:0000250|UniProtKB:P22513 149..151 1/1 (100%)
Gp_dh_C 155..312 CDD:280894 127/156 (81%)