DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and gpd-1

DIOPT Version :9

Sequence 1:NP_001033936.1 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_496237.1 Gene:gpd-1 / 174603 WormBaseID:WBGene00001683 Length:341 Species:Caenorhabditis elegans


Alignment Length:340 Identity:249/340 - (73%)
Similarity:287/340 - (84%) Gaps:9/340 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSK--IGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGG 62
            |||  :||||||||||||||||::|. ..|||||||||.::|||||||:|||||:|||||..:|.
 Worm     1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGD 65

  Fly    63 FLVV-----NGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPS 122
            ||:|     :..||.||:.:|||.|.|.|..|::||||||||||.:|||.||:||||||||||||
 Worm    66 FLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPS 130

  Fly   123 ADAPMFVCGVNLDAY-SPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVD 186
            |||||:|.|||.:.| :.:..|||||||||||||||||||||||.|:|||||||||.||||||||
 Worm   131 ADAPMYVVGVNHEKYDASNDHVVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVD 195

  Fly   187 GPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGAT 251
            |||||||||||||.||||||:||||||||||||.|||||||||||||||:||||||||||.|.|:
 Worm   196 GPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPAS 260

  Fly   252 YDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFG 316
            .|:||..|:.|:.||:||||.||:::||||||.||.|||:|||.|.||||..||||:||||||:|
 Worm   261 MDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYG 325

  Fly   317 YSNRVIDLIKYMQSK 331
            |||||:|||.|:.::
 Worm   326 YSNRVVDLIGYIATR 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_001033936.1 GapA 1..332 CDD:223135 249/340 (73%)
Gp_dh_N 3..149 CDD:278473 101/154 (66%)
Gp_dh_C 154..311 CDD:280894 125/156 (80%)
gpd-1NP_496237.1 Gp_dh_N 5..158 CDD:278473 100/152 (66%)
PTZ00023 6..337 CDD:173322 245/330 (74%)
Gp_dh_C 163..320 CDD:280894 125/156 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167507
Domainoid 1 1.000 259 1.000 Domainoid score I1071
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H107053
Inparanoid 1 1.050 501 1.000 Inparanoid score I748
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D394372at33208
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm4844
orthoMCL 1 0.900 - - OOG6_100218
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R464
SonicParanoid 1 1.000 - - X175
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.740

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