DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh1 and Gapdh

DIOPT Version :10

Sequence 1:NP_525108.2 Gene:Gapdh1 / 35728 FlyBaseID:FBgn0001091 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001276655.1 Gene:Gapdh / 14433 MGIID:95640 Length:359 Species:Mus musculus


Alignment Length:333 Identity:258/333 - (77%)
Similarity:292/333 - (87%) Gaps:1/333 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFL 64
            |.|:|:||||||||||.||||..| ..:||:||||||:|||||:|::|||||:|.|||.||.|.|
Mouse    27 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKL 91

  Fly    65 VVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            |:||:.||:|.||||.||.|..|||||||||||||||::||..|||||||:||||||||||||||
Mouse    92 VINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFV 156

  Fly   130 CGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||.:.|...:|:||||||||||||||||||:|||.|||||||||||.||||||||||||||||
Mouse   157 MGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWR 221

  Fly   195 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKV 259
            ||||||||||||:||||||||||||.|||||||||||||||||||||||.||.|.|.||:||..|
Mouse   222 DGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVV 286

  Fly   260 EEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            ::||:||||||||||:::|||.||.|::|||.|||.|||:|||.|||||||||||:||||||:||
Mouse   287 KQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDL 351

  Fly   325 IKYMQSKD 332
            :.||.||:
Mouse   352 MAYMASKE 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh1NP_525108.2 PLN02272 <2..328 CDD:177912 253/326 (78%)
GapdhNP_001276655.1 PLN02272 5..356 CDD:177912 255/328 (78%)

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