DRSC/TRiP Functional Genomics Resources

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Protein Alignment cn and CTF2B

DIOPT Version :9

Sequence 1:NP_523651.4 Gene:cn / 35724 FlyBaseID:FBgn0000337 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_565688.1 Gene:CTF2B / 817522 AraportID:AT2G29720 Length:427 Species:Arabidopsis thaliana


Alignment Length:419 Identity:94/419 - (22%)
Similarity:150/419 - (35%) Gaps:121/419 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RDERHG--RRRRVAVIGAGLVGSLAALNFARMGNHVDLYEYREDIRQALVVQGRSI-----NLAL 78
            |.|..|  |..:|.::|.|:.|...|:...|:|           ||..::.|..|:     :|.|
plant    33 RAETSGVDREEKVVIVGGGIGGLATAVALHRLG-----------IRSVVLEQAESLRTGGASLTL 86

  Fly    79 SQRGRKALAAVGLEQEVLATAIPMRGRML--HDVRGNSSVVLYDPINNQCLYSVGRRQLNEVLLN 141
            |:.|.:.|.|:.:..::....:.|:|.:|  .|.|...|....|...:|.:..|.||.|.|.|  
plant    87 SKNGWRVLDAISIGPQLRKQFLEMQGVVLKKEDGRELRSFKFKDNDQSQEVRGVERRVLLETL-- 149

  Fly   142 ACDKLPNIRCHFEHKLTS----AN------LREGSMEFRNPAKEAVAAHADLIVGCDGAFSSVRQ 196
             ..:||.....|..||.|    ||      |::|:...           |::::||||    :|.
plant   150 -ASQLPPQTIRFSSKLESIQSNANGDTLLQLKDGTRFL-----------ANIVIGCDG----IRS 198

  Fly   197 NNVRLPGFNYSQEYIETGYLELCIPSKSG------DFQMPANYLHIWPRNTFMMIALPNQDKSFT 255
            ......||:      |..|:..|.....|      .||...||  |:.|.               
plant   199 KVATWMGFS------EPKYVGYCAFRGLGFFPNGQPFQQKVNY--IFGRG--------------- 240

  Fly   256 VTLSMPFEIFAGIQNQNDLLEFFKLNFRDALPLIGEQQL--------IKDFFKTRPQFLVSI--- 309
                    :.||....:....::.:.|..  |.:|.|.:        .|:...|.|:.|.::   
plant   241 --------LRAGYVPVSATKVYWFITFNS--PSLGPQMMDPAILRKEAKELVSTWPEDLQNLIDL 295

  Fly   310 ------------------KCRPYHYADKALILGDAAHAMVPYYGQGMNAGMEDVTLLTDILAKQL 356
                              ...|.....:.:::|||.|.|.|..|||....:||..||.:.||..:
plant   296 TPDEAISRTPLADRWLWPGIAPSASKGRVVLVGDAWHPMTPNLGQGACCALEDSVLLANKLASAI 360

  Fly   357 -----PLDETLALFTESRWQDAFAICDLA 380
                 .::..:..:...||...|.:..||
plant   361 NGGTESVEGAMESYRSERWSQVFRLTVLA 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnNP_523651.4 UbiH 31..411 CDD:223727 90/407 (22%)
NADB_Rossmann 31..353 CDD:304358 83/373 (22%)
CTF2BNP_565688.1 UbiH 55..419 CDD:223727 86/397 (22%)
NADB_Rossmann 55..390 CDD:304358 86/397 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I4322
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2577
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

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