DRSC/TRiP Functional Genomics Resources

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Protein Alignment cn and coq6

DIOPT Version :9

Sequence 1:NP_523651.4 Gene:cn / 35724 FlyBaseID:FBgn0000337 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001038869.1 Gene:coq6 / 751691 ZFINID:ZDB-GENE-060825-297 Length:484 Species:Danio rerio


Alignment Length:435 Identity:88/435 - (20%)
Similarity:166/435 - (38%) Gaps:92/435 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VAVIGAGLVGSLAALNFA----RMGNHVDLYEYREDIRQALVVQGRSINL-ALSQRGRKALAAVG 90
            :.:.|.|:||:..|.:..    ..|..:.|.|...:.:...:.:..|..: ::|......|:.:|
Zfish    53 IIISGGGMVGTAMACSLGLDPNLTGKKILLLEAGHEKKMDKIPETYSTRVSSISPGSATLLSGLG 117

  Fly    91 LEQEVLATAIPMRGRMLHDVR----GNSSVVLYDPIN--NQCLYSVGRRQLNEVLLNACDK-LPN 148
            ....:    :.||.:..:.::    .:.:::.:|..|  ::..|.|.    |:|::.|..| |..
Zfish   118 AWDHI----VNMRCKPYNKMQVWDACSDALITFDKENLQDEMAYIVE----NDVIVAALTKQLQT 174

  Fly   149 IRCHFEHKLTSANLREGSMEFRNP----AKEAV-----------AAHADLIVGCDGAFSSVRQN- 197
            :..|     .....|...:::..|    ..|::           ..|..|::|.||..|.||:. 
Zfish   175 LSDH-----VKVQYRTKVVKYTWPHPYHVSESIPWVQVALANGKTLHTKLLIGADGPNSMVRREA 234

  Fly   198 NVRLPGFNYSQEYIETGYLELCIPSKSGDFQMPANYLHIWPRNTFMMIALPNQDKSFTVT----- 257
            .:....:||.|..: ...|.|..|:::.     ..:....|.....|:.|.:.:.|...:     
Zfish   235 GIPTVKWNYDQSAV-VAVLHLSEPTENN-----VAWQRFLPTGPIAMLPLSDTESSLVWSTSHQH 293

  Fly   258 ----LSMPFEIFAGI--------QNQNDLLEFFKLNFRDALPLI-----GEQQLIKDFF----KT 301
                |.|..|.|...        :|.::|:|.....||.||.::     ..:||.....    |:
Zfish   294 AEELLQMDEESFVDAINSAFWSNENHSELVETAGSLFRMALSVLMPDSGSARQLPPSVSGIGPKS 358

  Fly   302 RPQFLVSIKCRPYHYADKALILGDAAHAMVPYYGQGMNAGMEDVTLLTDILAKQLPLDETLALFT 366
            |..|.:.:.....:...:..::|||||.:.|..|||.|.|..||:.||.:|:             
Zfish   359 RVMFPLGMGHATEYIRHRVALIGDAAHRVHPLAGQGANLGFGDVSYLTQVLS------------- 410

  Fly   367 ESRWQDAFAICDL-AMYNYVEMRDLTKRWTFRLRKWLDTLLFRLF 410
                |.|:...|: ||.:.:|.....:|....:...:| |:.||:
Zfish   411 ----QAAYNGKDIGAMQHLLEFETERQRHNLPMMTAID-LMKRLY 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnNP_523651.4 UbiH 31..411 CDD:223727 88/435 (20%)
NADB_Rossmann 31..353 CDD:304358 76/375 (20%)
coq6NP_001038869.1 NADB_Rossmann 51..479 CDD:304358 88/435 (20%)
Ubi-OHases 52..483 CDD:273913 88/435 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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