DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cn and sqleb

DIOPT Version :9

Sequence 1:NP_523651.4 Gene:cn / 35724 FlyBaseID:FBgn0000337 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_017207816.2 Gene:sqleb / 565329 ZFINID:ZDB-GENE-060503-750 Length:492 Species:Danio rerio


Alignment Length:349 Identity:78/349 - (22%)
Similarity:137/349 - (39%) Gaps:69/349 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VAVIGAGLVGSLAALNFARMGNHVDLYEYREDIRQALVVQGRSINLALSQRGRKALAAVGLEQEV 95
            |.::|||::||..|....:.|..|.:      |.::|....|.:...|...|.:||..:|||:.|
Zfish    40 VIIVGAGVLGSSLASVLGQDGRKVTV------IERSLREPDRIVGELLQPGGYRALIELGLEKSV 98

  Fly    96 LA-TAIPMRGRMLHDVRGNSSV-VLYDPINNQC--LYSVGRRQLNEVLLNACDKLPNIRCHFEHK 156
            .. .|..:.|.::||......| :.|....:||  .:..||..:.  |..|....||:| ..|..
Zfish    99 EGLNAQIVNGYIIHDTESRMVVEIPYSEDQDQCGRAFHHGRFIMG--LRRAALAEPNVR-FIEGT 160

  Fly   157 LTSANLREG---SMEFRNPAKEAV-AAHADLIVGCDGAFSSVRQNNVRLPGFNYSQEYIE--TGY 215
            :|......|   .:::::.....: ..||.|.|..||.||:.|:        :.|.|.::  :.:
Zfish   161 VTYLEEENGCVKGVQYKDKDSGKIQRLHAPLTVVADGCFSNFRK--------SLSSETVQVCSNF 217

  Fly   216 LELCIPSKSGDFQMPANYLHIWPRNTFMMIALPNQDKSFTVTLSMPFEIFAGIQNQNDLLEFFKL 280
            :. ||...|.  |:..||..:                  .::...|..|:........:|    :
Zfish   218 VG-CIMKNSP--QLKPNYAEL------------------VLSCHGPLLIYQISSTDTRVL----V 257

  Fly   281 NFRDALPLIGEQQLIKDFFKTRPQ-----FLVSI-----KCRPYHYADKA-------LILGDAAH 328
            :.:..||...:|.:.::.....|.     ||:::     |..|..:...:       |:||||.:
Zfish   258 DIQGRLPKNLKQYMTEEIHPKLPDHLKEPFLLAVQNNRLKSMPASFLPSSPVSKPGVLLLGDAYN 322

  Fly   329 AMVPYYGQGMNAGMEDVTLLTDIL 352
            ...|..|.||:..:.||.:...:|
Zfish   323 MRHPLTGGGMSVALNDVRIWRRLL 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnNP_523651.4 UbiH 31..411 CDD:223727 78/349 (22%)
NADB_Rossmann 31..353 CDD:304358 78/349 (22%)
sqlebXP_017207816.2 FAD_binding_3 39..>205 CDD:332373 47/181 (26%)
NADB_Rossmann 188..465 CDD:328723 40/192 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.