DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1941 and prdm11

DIOPT Version :9

Sequence 1:NP_001286161.1 Gene:CG1941 / 35718 FlyBaseID:FBgn0033214 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_004913502.2 Gene:prdm11 / 100496272 XenbaseID:XB-GENE-6462838 Length:1181 Species:Xenopus tropicalis


Alignment Length:149 Identity:36/149 - (24%)
Similarity:54/149 - (36%) Gaps:41/149 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 HYRDYFPVQLVKTAELPPNKNYILASFPHGILGTGISINMGLDISKWLQL---------FPQVRP 143
            :|.:...:|:.:..|..||       |.|. ||..:....|..:.:|.:|         |..:..
 Frog  1007 NYGEEDMLQIYELLETIPN-------FLHD-LGREVGDTRGNLLMEWRELKADYCTKNGFKDLIG 1063

  Fly   144 KVATLDQNFL-----TPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFT----SNAVA 199
            .:....|.||     ..|::.|..|.......:.||..|        .|:||...|    |:.:|
 Frog  1064 HICKYKQRFLFLNKIVQILKVLPTSTACCEKGRNALQRL--------RKNNRSRLTLDQMSDLLA 1120

  Fly   200 ILVGG-------AQEALDS 211
            |.|.|       |:.||||
 Frog  1121 IAVNGAPIANFDAKRALDS 1139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1941NP_001286161.1 LPLAT 50..340 CDD:302626 36/149 (24%)
prdm11XP_004913502.2 PR-SET_PRDM11 108..234 CDD:380972
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165166235
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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