DRSC/TRiP Functional Genomics Resources

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Protein Alignment LRR and LOC100491722

DIOPT Version :9

Sequence 1:NP_001260788.1 Gene:LRR / 35715 FlyBaseID:FBgn0033212 Length:1486 Species:Drosophila melanogaster
Sequence 2:XP_031756568.1 Gene:LOC100491722 / 100491722 -ID:- Length:701 Species:Xenopus tropicalis


Alignment Length:715 Identity:241/715 - (33%)
Similarity:396/715 - (55%) Gaps:54/715 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SQLTKDLNESVKSILGRHTKILVKYM------------VKLETKGDKTENRVLVFTPVRVYLLSA 57
            |..:.|:::.:::|.......:|.:|            :|::|   |:|:.|:|.||.|.:||..
 Frog     6 SDTSSDMSDELQAISYEMQACIVDFMEPSEIVLMKPVQMKMKT---KSEDLVVVLTPWRAFLLYL 67

  Fly    58 KVPTKIECHFHYLDIVGVESKKSTHFSIVTNDRPYSFVTTGDAGNFSSVRHNHLLNADVILTDLA 122
            :.|.:::..|.||:|..::.:..:...|.|:...|.|       .|.|..     :.:.::..:|
 Frog    68 EHPLRVQTTFSYLEISDIDIQDPSLVVIHTDPCLYQF-------RFMSSE-----DLEQVIFHVA 120

  Fly   123 SAIKQIFPTVPLKYIIRKIDIQPPERETIFSEEFRPSDPRNVGPCGGFSAQYACMCDFHGVPYRE 187
            ::||::||......:||.......|:.....:........|.|||||||..||.:||::|...||
 Frog   121 TSIKKVFPDSSPGKLIRMTCADHEEKYKRIEDSLENITQNNQGPCGGFSQTYAALCDYNGFVLRE 185

  Fly   188 EVAWDVDTIYLSHDTRVLNLRDFDHLEPKDLMAIVSALEYNTFFRGLKAAHMRLSHETLERILHV 252
            ||.||||.||...:.|..|:.||.||:..|:...|::|.:|.:|..:.....:|..|..|:||:|
 Frog   186 EVQWDVDNIYHRQNIREFNILDFSHLDTTDIALTVASLSFNQWFTKIHCRDFKLRLEISEQILYV 250

  Fly   253 LKRSMWLEELHLEALGLRWDFLNKLSISVITNSNPAIRTIDLSHNIIEDKGASSLCALFGKIVQG 317
            :.||:.|||:.||..||:.:|..|::.::..|....:.|.:||.|.|:|:|.::....|.|..:.
 Frog   251 INRSLKLEEIVLENCGLKCEFAIKMAKALDNNPGSVLHTFNLSGNNIDDRGINAFTQYFNKNHKP 315

  Fly   318 AIHLAGPIAKVSKGLCKLALAHCGLTSKGVNQMSHSLTLNQSISNSLTYLDLSGNS---LKDDIT 379
            ..||  .|:|.|            :||||||.:..|...:::.:||:.:||||||.   ..:|..
 Frog   316 VKHL--NISKTS------------ITSKGVNSLFQSFVSHETFANSICHLDLSGNPGILATEDAI 366

  Fly   380 NLHNFLAQPNVLEHLDLASTDITLENLFGALLRGCATHLAHLNVSHNSFSTKKGKEIPPSFKQFF 444
            :.:|||.....|.||:||.||..|::|||.||.|..:.|::||||.|.::.||.|:|||...|||
 Frog   367 SFYNFLDNCKSLCHLNLAGTDCALDSLFGPLLHGSCSRLSYLNVSRNVYTHKKIKDIPPEVSQFF 431

  Fly   445 TSTFSLKHLNIAGCKLPMEALKNLLLGLACNESTAGLYLDLSSNTLGAQGAHVLESCIHGVRVLQ 509
            :.|.:|||||::|.|:|.|.|:.:|.||:.|:....|::|||...|.:.||.|::..|..:..|.
 Frog   432 SKTLALKHLNLSGTKIPSEMLREILHGLSTNDKIRNLHMDLSDCELRSSGAQVIQDMIFDINSLS 496

  Fly   510 SLDISDNNLDAELAPVLTAISKNPSIRTLHLTRSLTGMKPKHIPPVMDALVNLIQKDDFPLVELV 574
            |||:|:|..|:::..::.::.::.||:.:.|.::........:..::..:|.|||.:|..:..|.
 Frog   497 SLDLSNNGFDSDMVTLILSVGRSKSIKHVSLGKNFNIKSGTAVADIIHRIVQLIQDEDCTIESLS 561

  Fly   575 LSENKLKHDLHDFINALGSNQSLQKLDISGNFMGDVGARLLAKALQINNRLRTIYMDKNGVTLQG 639
            |::::||.:::..:||||...:|:|:|||||.|||.||:.||||||:|.:||.|..|||..|..|
 Frog   562 LADSRLKSEINILLNALGKKNNLRKIDISGNGMGDSGAKHLAKALQLNTQLRMITWDKNNTTANG 626

  Fly   640 YADIVYALEHNHSMRTIPFPVFDIAPHLKSHPDKTDAVMRKMQELLQRN----------CNGLKR 694
            :..:.:|||.|:::|.:|.|:.||:...:.:..||:..:..:|..|.||          .|||.:
 Frog   627 FLTLGHALERNYTLRFMPLPLSDISQAYRMNQSKTEDALHLIQSYLLRNNHIKENVVRKVNGLHK 691

  Fly   695  694
             Frog   692  691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRNP_001260788.1 LRR_RI 198..516 CDD:238064 120/320 (38%)
leucine-rich repeat 289..331 CDD:275381 14/41 (34%)
leucine-rich repeat 332..352 CDD:275381 6/19 (32%)
leucine-rich repeat 364..389 CDD:275380 10/27 (37%)
leucine-rich repeat 391..417 CDD:275380 14/25 (56%)
leucine-rich repeat 418..449 CDD:275380 16/30 (53%)
LRR_RI 441..>656 CDD:238064 82/214 (38%)
leucine-rich repeat 450..467 CDD:275380 10/16 (63%)
leucine-rich repeat 468..503 CDD:275380 12/34 (35%)
leucine-rich repeat 508..534 CDD:275380 7/25 (28%)
leucine-rich repeat 535..564 CDD:275380 4/28 (14%)
leucine-rich repeat 570..596 CDD:275380 8/25 (32%)
leucine-rich repeat 597..618 CDD:275380 14/20 (70%)
CARMIL_C 797..1108 CDD:292619
LOC100491722XP_031756568.1 Carm_PH 36..128 CDD:407743 25/106 (24%)
LRR_RI 234..521 CDD:423007 111/300 (37%)
leucine-rich repeat 287..311 CDD:275381 8/23 (35%)
leucine-rich repeat 316..349 CDD:275381 14/46 (30%)
leucine-rich repeat 350..377 CDD:275381 10/26 (38%)
leucine-rich repeat 378..404 CDD:275381 14/25 (56%)
LRR_RI 426..686 CDD:423007 92/259 (36%)
leucine-rich repeat 437..467 CDD:275381 14/29 (48%)
leucine-rich repeat 522..548 CDD:275380 2/25 (8%)
leucine-rich repeat 549..583 CDD:275380 12/33 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D368769at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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