DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRR and carmil1

DIOPT Version :9

Sequence 1:NP_001260788.1 Gene:LRR / 35715 FlyBaseID:FBgn0033212 Length:1486 Species:Drosophila melanogaster
Sequence 2:XP_031759347.1 Gene:carmil1 / 100145775 XenbaseID:XB-GENE-988355 Length:1402 Species:Xenopus tropicalis


Alignment Length:1474 Identity:501/1474 - (33%)
Similarity:762/1474 - (51%) Gaps:238/1474 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SQLTKDLNESVKSILGRHTKILVKYMVKLETKGDKTENRVLVFTPVRVYLLSAKVPTKIECHFHY 69
            |::.::|.||::.::||..||.|:..||||.|||:.||:|||....|.::|:|:||||:|..|.|
 Frog     6 SEVPRELLESIRDVIGRKIKIAVRKKVKLELKGDRVENKVLVLASCRAFILTARVPTKLELTFSY 70

  Fly    70 LDIVGVESKKSTHFSIVTNDRPYSFVTTGDAGNFSSVRHNHLLNADVILTDLASAIKQIFPTV-P 133
            |:|.|:...|..|..:.|           :..|. |::.:...:.:.::..:.:.:::|||.: |
 Frog    71 LEIQGMICSKPGHLMVET-----------EKCNL-SMKMSSSEDVNEVVAHIGTCLRKIFPGLSP 123

  Fly   134 LKYIIRKIDIQPPERETIFSEEFRPSDPRNVGPCGGFSAQYACMCDFHGVPYREEVAWDVDTIYL 198
            :| ||:|:.::||:|.......:.......||||||||..|||:||:.|:||||||.||||||||
 Frog   124 VK-IIKKVTMEPPDRLANLQALWDSQTVTEVGPCGGFSQMYACVCDWLGLPYREEVQWDVDTIYL 187

  Fly   199 SHDTRVLNLRDFDHLEPKDLMAIVSALEYNTFFRGLKAAHMRLSHETLERILHVLKRSMWLEELH 263
            :.|||.|||:||.||:.:||:.||:|||||.:|..|....::||.:..|:||.|:.:|..||||.
 Frog   188 TQDTRELNLQDFSHLDHRDLIPIVAALEYNQWFTKLSTKDLKLSADVCEQILRVVSKSSRLEELV 252

  Fly   264 LEALGLRWDFLNKLSISVITNSNPAIRTIDLSHNIIEDKGASSLCALFGKIVQGAIH-LAGPIAK 327
            ||..|||.||..|||.::..|.|..:.||:|:.|.:||:|               :| |:.|.||
 Frog   253 LENAGLRIDFAQKLSSALAHNPNSGLHTINLASNPLEDRG---------------VHCLSIPFAK 302

  Fly   328 VSKGLCKLALAHCGLTSKGVNQMSHSLTLNQSISNSLTYLDLSGNSLK-DDITNLHNFLAQPNVL 391
            :.|||..|.|:...|:.||||.:|.||:.||:|::|||:||||||.|: ||::.|:|||||||.:
 Frog   303 LPKGLKHLNLSRTSLSPKGVNSLSQSLSANQTIASSLTHLDLSGNVLRGDDLSYLYNFLAQPNAI 367

  Fly   392 EHLDLASTDITLENLFGALLRGCATHLAHLNVSHNSFSTKKGKEIPPSFKQFFTSTFSLKHLNIA 456
            .:|||::|:..::.:..|||||...|||.||:|...||.:|||||.||.||||:|:.:|.|:|::
 Frog   368 VYLDLSNTECAIDMVCAALLRGGLQHLAMLNLSRTVFSHRKGKEISPSIKQFFSSSLALTHINLS 432

  Fly   457 GCKLPMEALKNLLLGLACNESTAGLYLDLSSNTLG----AQGAHVLESCIHGVRVLQSLDISDNN 517
            |.||..|.||.||||||||.:...:.||||:..||    :.||.|||.||..:..:.|||||||.
 Frog   433 GTKLSSEPLKALLLGLACNPNLKEVSLDLSNCELGHCLRSAGAQVLEGCIAEIHNISSLDISDNG 497

  Fly   518 LDAELAPVLTAISKNPSIRTLHLTRSLTGMKPKHIPPVMDALVNLIQKDDFPLVELVLSENKLKH 582
            |:::|:.::..:|||.|||.|.|.::...||.|::.||:|.||::||.::.||..|.|:::|||.
 Frog   498 LESDLSTLVVWLSKNRSIRHLALGKNFNNMKSKNLIPVLDNLVHMIQDEESPLQSLSLADSKLKT 562

  Fly   583 DLHDFINALGSNQSLQKLDISGNFMGDVGARLLAKALQINNRLRTIYMDKNGVTLQGYADIVYAL 647
            |:...|||||||.||.|:|||||.|||:||::||||||||.:|||:..|||.:|.||:.||..||
 Frog   563 DVTIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDISVAL 627

  Fly   648 EHNHSMRTIPFPVFDIAPHLKSHPDKTDAVMRKMQELLQRNCNGLKRATGQGFRLQHGFMLSSTH 712
            |.|:::|.:|.|:.|.:..||::|:||:..::|::..|.||....|....|.:|||...:.|:|.
 Frog   628 EKNYTLRFMPIPMNDASQALKTNPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQSIVTSTTQ 692

  Fly   713 QLVDKLVAETQDTI-SLAKGG----SESASAVQRLITDAENCKQLMPKLQE-------AVRNESH 765
            |::|::..:.||.: ||...|    .|...:.:|::.||:|.|.|:|.|..       ...:...
 Frog   693 QMIDRICVKVQDHLNSLRNCGVDFVIEDVKSAERIMRDAKNSKTLLPNLYHLGGAAWAGANSLPI 757

  Fly   766 PIEMKMTRVASELSYTIKSYLEETMETMMRTGIEQCPKTLGNQIVVQDLRKALAERLVVPEEFLQ 830
            ||:..:..:|.|::..:...|::.:|:|:......||..:....:.:||.:|..|::.:|..|::
 Frog   758 PIQETLESMAGEVTRVVDEQLKDLLESMVDAAENLCPNVMKKSNIREDLIQASTEKISIPRNFVK 822

  Fly   831 ICLLNNAGSEIMNKVGEIEQSLAAAISDRATDEVLEALTR---------YRRGMGIAESPSVLLD 886
            ..||..:|.:|:||:.|::.::|:.:|||..||:|:||:.         .:||..:....|:.::
 Frog   823 NVLLEQSGIDILNKISEVKLTVASFLSDRIVDEILDALSTSHHKLADHLTKRGKPLLHQDSMEIE 887

  Fly   887 EPQTPDIVRSRSSHDADGLIIRPGGRGSILPKLGLESPTKLEYLNLA--------TPHLPTKRRS 943
            ..:.                 ||..|.:|..: ......:||.|:..        ||  .:||:|
 Frog   888 PAEE-----------------RPTKRSTITIE-DFSEMDRLEDLDTCMTLCCRSMTP--KSKRKS 932

  Fly   944 L-AKKVRPQSVVENL------SLGHFPDLLESPSSHRSNSQLSARAAAGAAALVGAANMTDSIAV 1001
            : ::.:||.|....:      :|...|..:|.|.  ..:|:...|.:.|.|              
 Frog   933 IHSRMLRPVSRAFEMEFDLDRALVDVPIHIEDPP--YPSSRPDKRTSGGMA-------------- 981

  Fly  1002 DDGGVDECCDSITELPS-ASFQLQHLVKGRPKRAKTRAPTRPL-------VTTECAGGSREIGEG 1058
                         |||| ...:|:|..|.||||.|.:.|::..       ...|..|....:.||
 Frog   982 -------------ELPSEEGKKLEHFTKLRPKRMKKQQPSKSTQLGAEAPTDGEQNGLMARVDEG 1033

  Fly  1059 LEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPTMSRDGNGHMTSEETTPILEERRPIKLERQ 1123
            ::.||..            ..|..|....||  ....|:||.   ..||     ::||..:....
 Frog  1034 VDEFFSK------------KVTKMESKKHSF--KSLESQDGG---EWEE-----KKRRESRKSGF 1076

  Fly  1124 SPLLKSASWATRSRS---TDNLEKYSPLVGRKSPL------VKMRTEGGPGSGSATG------AE 1173
            ..|:|..|.:.||::   |:  |..||....|||.      .|:....|..|.||:.      :|
 Frog  1077 LNLIKPRSKSERSQTVIITE--EPSSPKAPLKSPAPDTAKKEKVAESNGTVSSSASAGSSTERSE 1139

  Fly  1174 ETSMPSS---NLLKATAREDKTRSPSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVG 1235
            |...|.|   ||      :|.|:|..:||..|..:|....:...|:|:|......|:.|     .
 Frog  1140 EVKTPDSLEENL------DDLTKSERTDSKSSPQSGRRYGVQVMGSGLLAEMKAKQEKR-----A 1193

  Fly  1236 SEPKAGGDLITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTS------GGG 1294
            :..|.|.|:  |:.:........:|||              ||  |..|.....::      |.|
 Frog  1194 ATKKLGNDV--GSKDVSDGLIITEKLE--------------GS--GAVPKFHQPSTESRFPLGRG 1240

  Fly  1295 SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTSSTGSTSNSVSVSSST 1359
            ....:|              |..|     ||..|.|     ..|||:.:||:..||....:.|:.
 Frog  1241 ECAALT--------------ADKN-----LKSEVKP-----DGSVRSKSSSSTPTSPKPPLQSTK 1281

  Fly  1360 NANTSMTVLNQSQTRSRIVSSTSSTDSTETITERSTTSTSSSSS 1403
            .|.|:         |..:.....|:..|:.:.|..:...|..|:
 Frog  1282 PALTA---------RPSVPQKPRSSSRTDDVPESPSGLCSPKSA 1316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRNP_001260788.1 LRR_RI 198..516 CDD:238064 157/323 (49%)
leucine-rich repeat 289..331 CDD:275381 12/42 (29%)
leucine-rich repeat 332..352 CDD:275381 8/19 (42%)
leucine-rich repeat 364..389 CDD:275380 17/25 (68%)
leucine-rich repeat 391..417 CDD:275380 9/25 (36%)
leucine-rich repeat 418..449 CDD:275380 19/30 (63%)
LRR_RI 441..>656 CDD:238064 114/218 (52%)
leucine-rich repeat 450..467 CDD:275380 8/16 (50%)
leucine-rich repeat 468..503 CDD:275380 20/38 (53%)
leucine-rich repeat 508..534 CDD:275380 12/25 (48%)
leucine-rich repeat 535..564 CDD:275380 12/28 (43%)
leucine-rich repeat 570..596 CDD:275380 14/25 (56%)
leucine-rich repeat 597..618 CDD:275380 14/20 (70%)
CARMIL_C 797..1108 CDD:292619 77/342 (23%)
carmil1XP_031759347.1 Carm_PH 26..119 CDD:407743 33/104 (32%)
LRR_RI <229..373 CDD:423007 73/158 (46%)
leucine-rich repeat 248..275 CDD:275378 15/26 (58%)
leucine-rich repeat 278..306 CDD:275380 12/42 (29%)
LRR_RI 307..628 CDD:423007 168/320 (53%)
leucine-rich repeat 307..338 CDD:275380 14/30 (47%)
leucine-rich repeat 339..360 CDD:275380 12/20 (60%)
leucine-rich repeat 361..393 CDD:275380 14/31 (45%)
leucine-rich repeat 394..425 CDD:275380 19/30 (63%)
leucine-rich repeat 426..453 CDD:275380 17/26 (65%)
leucine-rich repeat 454..487 CDD:275380 13/32 (41%)
leucine-rich repeat 505..541 CDD:275380 15/35 (43%)
leucine-rich repeat 550..576 CDD:275380 14/25 (56%)
leucine-rich repeat 577..604 CDD:275380 20/26 (77%)
CARMIL_C 789..1084 CDD:406410 82/365 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2975
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H9757
Inparanoid 1 1.050 680 1.000 Inparanoid score I709
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D208951at2759
OrthoFinder 1 1.000 - - FOG0002311
OrthoInspector 1 1.000 - - otm47788
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2004
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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