Protein Alignment U2A and Lrmda

DIOPT Version :10

• Sequence 1: NP_610315.1
• Gene: U2A / 35713
• FlyBaseID: FBgn0033210
• Length: 265
• Species: Drosophila melanogaster
• Sequence 2: XP_006519739.1
• Gene: Lrmda / 76633
• MGIID: 1923883
• Length: 239
• Species: Mus musculus
• Alignment Length: 174
• Identity: 50/174 - (28%)
• Similarity: 78/174 - (44%)
• Gaps: 41/174 - (23%)

  Fly    19 CRERELDLRGYKIPQIENLGATLDQF-DTIDLSDNDLRKLDNLPHLPRLKCLLLNNNRILRISEG 82
            |||         ||  |:||.....| ..:|||.|.||.|:.|.....|:.|:|:||.:     |
Mouse    18 CRE---------IP--EHLGRDFGHFAKRLDLSFNLLRSLEGLSAFRSLEELILDNNLL-----G 66

  Fly    83 LEEAVPNLGSIILTGNNLQELSDLEPLVGF-----TKLETICLLINPVSTKPN------------ 130
            .:..:|.|..:.....|..:::|||.|:..     ..||.:.||.|...  ||
Mouse    67 DDLVLPGLPHLHTLTLNKNQITDLEYLLDHLAEVTPSLEYLSLLGNVAC--PNELVNLEKDEEDY 129

  Fly   131 --YREYMAYKFPQLRLLDFRKIKQKDRQAA---QEFFRTKQGKD 169
              ||.::.:|.|:|:.||.:|:.:::|:.|   ..|.:..:.||
Mouse   130 KRYRCFVLHKLPKLKFLDAQKVTRQEREEALVRGAFMKVVKPKD 173

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
U2A	NP_610315.1	LRR_9	1..175	CDD:405295	50/174 (29%)
		leucine-rich repeat	22..43	CDD:275380	5/20 (25%)
		leucine-rich repeat	46..65	CDD:275378	8/18 (44%)
		leucine-rich repeat	66..89	CDD:275378	6/22 (27%)
		leucine-rich repeat	90..114	CDD:275378	6/28 (21%)
Lrmda	XP_006519739.1	LRR_9	23..159	CDD:405295	41/142 (29%)
		leucine-rich repeat	34..54	CDD:275378	8/19 (42%)
		leucine-rich repeat	55..76	CDD:275378	8/25 (32%)
		leucine-rich repeat	77..103	CDD:275378	5/25 (20%)
		leucine-rich repeat	104..142	CDD:275378	10/39 (26%)