DRSC/TRiP Functional Genomics Resources

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Protein Alignment U2A and SNRPA1

DIOPT Version :9

Sequence 1:NP_610315.1 Gene:U2A / 35713 FlyBaseID:FBgn0033210 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_003081.2 Gene:SNRPA1 / 6627 HGNCID:11152 Length:255 Species:Homo sapiens


Alignment Length:264 Identity:136/264 - (51%)
Similarity:178/264 - (67%) Gaps:20/264 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
            |||||.|||.|:.||.|..|:|||||||||||.||||||||||||.||.|||::||||..|.|.|
Human     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65

  Fly    66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
            ||.||:|||||.||.|||::|:|.|..:|||.|:|.||.||:||.....|..:.:|.|||:.|.:
Human    66 LKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKH 130

  Fly   131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSK-MSAAAAIAAEAGNGK 194
            ||.|:.||.||:|:|||:|:|.|:||.|::.|:.|:|..:.|:|:|:|| .:..|.:..:.    
Human   131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDK---- 191

  Fly   195 GRGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLP---------DKFQHEMEA-VA 249
               .:||  .:|.|::.|:.||..||:|||||||..:|||||:|         |..:.|||. ..
Human   192 ---KKGG--PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEEDTV 251

  Fly   250 QNGA 253
            .||:
Human   252 TNGS 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2ANP_610315.1 LRR_9 1..175 CDD:258718 103/173 (60%)
leucine-rich repeat 22..43 CDD:275380 19/20 (95%)
LRR_4 46..81 CDD:289563 23/34 (68%)
leucine-rich repeat 46..65 CDD:275378 11/18 (61%)
leucine-rich repeat 66..89 CDD:275378 15/22 (68%)
leucine-rich repeat 90..114 CDD:275378 12/23 (52%)
SNRPA1NP_003081.2 LRR_9 1..175 CDD:405295 103/173 (60%)
LRR 1 20..41 18/20 (90%)
leucine-rich repeat 22..43 CDD:275378 19/20 (95%)
LRR 2 43..64 13/20 (65%)
leucine-rich repeat 44..65 CDD:275378 13/20 (65%)
LRR 3 65..86 15/20 (75%)
leucine-rich repeat 66..89 CDD:275378 15/22 (68%)
LRR 4 89..110 11/20 (55%)
leucine-rich repeat 90..114 CDD:275378 12/23 (52%)
leucine-rich repeat 115..127 CDD:275378 5/11 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201 8/35 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..255 11/32 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165146871
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1644
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2325
Inparanoid 1 1.050 245 1.000 Inparanoid score I3294
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54461
OrthoDB 1 1.010 - - D1447031at2759
OrthoFinder 1 1.000 - - FOG0005778
OrthoInspector 1 1.000 - - oto88392
orthoMCL 1 0.900 - - OOG6_102567
Panther 1 1.100 - - LDO PTHR10552
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1269
SonicParanoid 1 1.000 - - X4167
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.800

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