Protein Alignment U2A and snrpa1

DIOPT Version :10

• Sequence 1: NP_610315.1
• Gene: U2A / 35713
• FlyBaseID: FBgn0033210
• Length: 265
• Species: Drosophila melanogaster
• Sequence 2: NP_001007384.2
• Gene: snrpa1 / 492511
• ZFINID: ZDB-GENE-041114-82
• Length: 277
• Species: Danio rerio
• Alignment Length: 256
• Identity: 132/256 - (51%)
• Similarity: 177/256 - (69%)
• Gaps: 18/256 - (7%)

  Fly     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
            |||||.|||.|:.||.||.|:|||||||||||.:||||||||||||||||||::||||..|.|.|
Zfish     1 MVKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEVRKLDGFPLLKR 65

  Fly    66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
            ||.||:|||||.||.|.||:|:|:|..:|||.||:|||.||:||.....|..:.||.|||:.|.:
Zfish    66 LKTLLVNNNRICRIGENLEQALPDLKELILTSNNIQELGDLDPLATVKSLSLLSLLRNPVTNKKH 130

  Fly   131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSK-MSAAAAIAAEAGNGK 194
            ||.|:..|.||:|:|||:|:|.|:||.|::.|:.|:|..:.|:|:::|| .:..|.:..|...|
Zfish   131 YRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAKQSKTFTPGAGLQTEKKTG- 194

  Fly   195 GRGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQNGAGH 255
                     .:..:::.|:.||..|:||||||||..:||:||:|.:       ..::|||:
Zfish   195 ---------PSAAEVEAIKNAIANATSLAEVERLKGLLQAGQIPGR-------DLRSGAGN 239

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
U2A	NP_610315.1	LRR_9	1..175	CDD:405295	106/173 (61%)
		leucine-rich repeat	22..43	CDD:275380	18/20 (90%)
		leucine-rich repeat	46..65	CDD:275378	13/18 (72%)
		leucine-rich repeat	66..89	CDD:275378	15/22 (68%)
		leucine-rich repeat	90..114	CDD:275378	13/23 (57%)
snrpa1	NP_001007384.2	LRR_9	1..175	CDD:405295	106/173 (61%)
		leucine-rich repeat	22..43	CDD:275378	18/20 (90%)
		leucine-rich repeat	46..65	CDD:275378	13/18 (72%)
		leucine-rich repeat	66..89	CDD:275378	15/22 (68%)