DRSC/TRiP Functional Genomics Resources

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Protein Alignment U2A and Lrrc61

DIOPT Version :10

Sequence 1:NP_610315.1 Gene:U2A / 35713 FlyBaseID:FBgn0033210 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_808404.2 Gene:Lrrc61 / 243371 MGIID:2652848 Length:259 Species:Mus musculus


Alignment Length:399 Identity:75/399 - (18%)
Similarity:120/399 - (30%) Gaps:147/399 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 TILEASQRVGGRIRTTPFGAGIVELGAQWCHGEKGN--VVYELASA----YPDLLKASIIVEDAA 112
            ||||...|..        .||          |.|.|  ||:||..:    .||.|.....||...
Mouse  1318 TILEVQPRSS--------AAG----------GGKSNDEVVHELVDSILAKIPDKLDMDAAVESLF 1364

  Fly   113 LIQSNGVRIDDELVEKVSSLAEQISESEDRMSYAGSLGDFFTETYWQRLRTD--------AGFSD 169
            |....|         :|:||...:.:..||.::           ..:.|:|.        ||...
Mouse  1365 LQDPKG---------RVNSLTTVLGQEVDRFNF-----------LLRVLKTSLCTLQKAIAGLVV 1409

  Fly   170 VSHELAEQFLVYFHNRGRGDSAYDSWYDVAANETDSYQETEGNQALAWNSRTGYSTILDIVSWDG 234
            :|.|:.:.:..:.:|:     ..|.|                       |...|.::..:.||  
Mouse  1410 MSEEMEKIYNSFLNNQ-----VPDHW-----------------------SNAAYPSLKPLGSW-- 1444

  Fly   235 VHTNNVLITTEDGSQYKADHVVVTVSLGDLKENSATMFTPALPTVNQQA---IEGLNF------G 290
                                      :.||  |..|.|.....|..|..   |.|..|      |
Mouse  1445 --------------------------VRDL--NLRTAFIENWITRGQPKSFWISGFFFPQGFLTG 1481

  Fly   291 TVNKIFTLYNAPLPEGMANSVFLLWHKSDLDALRRSKYAWAEAVAAF-----FRVDHQ-PN---- 345
            ::......||.|:.|        |..:.::..:.|.:....||....     ..:|.: ||    
Mouse  1482 SLQNHARKYNLPIDE--------LNFRFNMVPVYRDQTLVTEAQKTLAPGKELDMDQELPNIEDG 1538

  Fly   346 --VLGAWLNGIEGRQAELLPDEVVQEGLAHLLEIFLPKLNFSHVQSIIRSKWSSDRLFRGSYSSR 408
              |.|.:::........:    ||::.|:.::...||.::|...|:.:    ....|:.......
Mouse  1539 VLVHGMFMDACRWDDTSM----VVEDALSRVMNPMLPVVHFEPQQNYV----PEPSLYHAPLYKT 1595

  Fly   409 STLTETLGT 417
            |....||.|
Mouse  1596 SARAGTLST 1604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2ANP_610315.1 LRR_9 1..175 CDD:405295 32/134 (24%)
leucine-rich repeat 22..43 CDD:275380
leucine-rich repeat 46..65 CDD:275378 5/10 (50%)
leucine-rich repeat 66..89 CDD:275378 4/22 (18%)
leucine-rich repeat 90..114 CDD:275378 9/27 (33%)
Lrrc61NP_808404.2 LRR <49..>131 CDD:443914
LRR 1 54..75
leucine-rich repeat 55..76 CDD:275380
LRR 2 76..97
leucine-rich repeat 77..98 CDD:275380
LRR 3 98..119
leucine-rich repeat 99..123 CDD:275380
Blue background indicates that the domain is not in the aligned region.

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