DRSC/TRiP Functional Genomics Resources

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Protein Alignment U2A and mog-2

DIOPT Version :9

Sequence 1:NP_610315.1 Gene:U2A / 35713 FlyBaseID:FBgn0033210 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_494763.1 Gene:mog-2 / 173767 WormBaseID:WBGene00003390 Length:253 Species:Caenorhabditis elegans


Alignment Length:265 Identity:113/265 - (42%)
Similarity:161/265 - (60%) Gaps:14/265 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
            ||:||.||..:..|::|....||::|||.|||.|||:|.|.||||.|||:|||:|||||.|...|
 Worm     1 MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNFPTFSR 65

  Fly    66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
            |..|.|:||||..|:..:...:|||.::.||.||:.||.|:|||....|||.:..:.||::.|.|
 Worm    66 LNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTFIGNPITHKDN 130

  Fly   131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKG 195
            ||.||.||.|.:|::||.:::..:|:||::.|:.|.||.....|.:.......:.|.....:..|
 Worm   131 YRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHTEDPSEIEPNENSSGG 195

  Fly   196 RGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDK-FQHEMEAVAQNGAGHNGSG 259
                |.||.: :|.::|:||||.|.||:||..|..||.||::|:| :..:|:        .||:.
 Worm   196 ----GARLTD-EDREKIKEAIKNAKSLSEVNYLQSILASGKVPEKGWNRQMD--------QNGAD 247

  Fly   260 AVAME 264
            ..|||
 Worm   248 GEAME 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2ANP_610315.1 LRR_9 1..175 CDD:258718 83/173 (48%)
leucine-rich repeat 22..43 CDD:275380 13/20 (65%)
LRR_4 46..81 CDD:289563 21/34 (62%)
leucine-rich repeat 46..65 CDD:275378 12/18 (67%)
leucine-rich repeat 66..89 CDD:275378 8/22 (36%)
leucine-rich repeat 90..114 CDD:275378 11/23 (48%)
mog-2NP_494763.1 leucine-rich repeat 90..103 CDD:275378 5/12 (42%)
leucine-rich repeat 115..141 CDD:275380 12/25 (48%)
LRR_9 1..172 CDD:258718 83/170 (49%)
leucine-rich repeat 21..36 CDD:275378 9/14 (64%)
leucine-rich repeat 46..65 CDD:275378 12/18 (67%)
LRR_4 65..108 CDD:289563 19/42 (45%)
leucine-rich repeat 66..89 CDD:275378 8/22 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159077
Domainoid 1 1.000 45 1.000 Domainoid score I8323
eggNOG 1 0.900 - - E2759_KOG1644
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2325
Inparanoid 1 1.050 204 1.000 Inparanoid score I2438
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54461
OrthoDB 1 1.010 - - D1447031at2759
OrthoFinder 1 1.000 - - FOG0005778
OrthoInspector 1 1.000 - - oto20325
orthoMCL 1 0.900 - - OOG6_102567
Panther 1 1.100 - - LDO PTHR10552
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1269
SonicParanoid 1 1.000 - - X4167
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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