Sequence 1: | NP_610315.1 | Gene: | U2A / 35713 | FlyBaseID: | FBgn0033210 | Length: | 265 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002939312.2 | Gene: | snrpa1 / 100486145 | XenbaseID: | XB-GENE-1007226 | Length: | 255 | Species: | Xenopus tropicalis |
Alignment Length: | 264 | Identity: | 136/264 - (51%) |
---|---|---|---|
Similarity: | 175/264 - (66%) | Gaps: | 20/264 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
Fly 66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
Fly 131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKG 195
Fly 196 RGSEGGRLA-NPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDK---------FQHEM-EAVA 249
Fly 250 QNGA 253 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
U2A | NP_610315.1 | LRR_9 | 1..175 | CDD:258718 | 104/173 (60%) |
leucine-rich repeat | 22..43 | CDD:275380 | 19/20 (95%) | ||
LRR_4 | 46..81 | CDD:289563 | 25/34 (74%) | ||
leucine-rich repeat | 46..65 | CDD:275378 | 12/18 (67%) | ||
leucine-rich repeat | 66..89 | CDD:275378 | 16/22 (73%) | ||
leucine-rich repeat | 90..114 | CDD:275378 | 10/23 (43%) | ||
snrpa1 | XP_002939312.2 | LRR_9 | 1..175 | CDD:373143 | 104/173 (60%) |
leucine-rich repeat | 46..65 | CDD:275380 | 12/18 (67%) | ||
leucine-rich repeat | 90..114 | CDD:275380 | 10/23 (43%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H2325 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG54461 | |
OrthoDB | 1 | 1.010 | - | - | D1447031at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR10552 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 6.030 |