Protein Alignment U2A and snrpa1

DIOPT Version :10

• Sequence 1: NP_610315.1
• Gene: U2A / 35713
• FlyBaseID: FBgn0033210
• Length: 265
• Species: Drosophila melanogaster
• Sequence 2: XP_002939312.2
• Gene: snrpa1 / 100486145
• XenbaseID: XB-GENE-1007226
• Length: 255
• Species: Xenopus tropicalis
• Alignment Length: 264
• Identity: 136/264 - (51%)
• Similarity: 175/264 - (66%)
• Gaps: 20/264 - (7%)

  Fly     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
            |||||.:||.|:.||.|..|:|||||||||||.|||||||||||||||.|||::||||..|.|.|
 Frog     1 MVKLTADLIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDTIDCSDNEIRKLDGFPLLKR 65

  Fly    66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
            ||.||||||||.||.||:|.|:|||..:|||.|::.||.||:.|.....|..|.||.|||:.|.:
 Frog    66 LKTLLLNNNRICRIGEGIEHALPNLTELILTNNSITELGDLDNLSPCKHLTYISLLRNPVTNKRH 130

  Fly   131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKG 195
            ||.|:.||.||:|:|||.|:||.:|:.|...|:.|:|..:.|:|:::||....         |.|
 Frog   131 YRMYVIYKIPQVRVLDFEKVKQSEREEAANMFKGKRGAQLAKDIAKRSKTFVP---------GAG 186

  Fly   196 RGSEGGRLA-NPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDK---------FQHEM-EAVA 249
            ..:|..:.. :|.|::.|:.||..|::|||||||:.:|||||:|.|         .:.|| |.|.
 Frog   187 LPTEKKKAGPSPGDVEAIKNAIANATTLAEVERLNGLLQSGQIPGKDHVLATSEEAEEEMDEDVV 251

  Fly   250 QNGA 253
            .||:
 Frog   252 TNGS 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
U2A	NP_610315.1	LRR_9	1..175	CDD:405295	104/173 (60%)
		leucine-rich repeat	22..43	CDD:275380	19/20 (95%)
		leucine-rich repeat	46..65	CDD:275378	12/18 (67%)
		leucine-rich repeat	66..89	CDD:275378	16/22 (73%)
		leucine-rich repeat	90..114	CDD:275378	10/23 (43%)
snrpa1	XP_002939312.2	LRR_9	1..175	CDD:405295	104/173 (60%)
		leucine-rich repeat	46..65	CDD:275380	12/18 (67%)
		leucine-rich repeat	90..114	CDD:275380	10/23 (43%)