Protein Alignment U2A and Snrpa1

DIOPT Version :10

• Sequence 1: NP_610315.1
• Gene: U2A / 35713
• FlyBaseID: FBgn0033210
• Length: 265
• Species: Drosophila melanogaster
• Sequence 2: NP_001258252.1
• Gene: Snrpa1 / 100361269
• RGDID: 2320494
• Length: 255
• Species: Rattus norvegicus
• Alignment Length: 268
• Identity: 138/268 - (51%)
• Similarity: 179/268 - (66%)
• Gaps: 23/268 - (8%)

  Fly     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPR 65
            |||||.|||.|:.||.|..|:|||||||||||.||||||||||||.||.|||::||||..|.|.|
  Rat     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65

  Fly    66 LKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPN 130
            ||.||:|||||.||.|||::|:|.|..:|||.|:|.||.||:||.....|..:.:|.|||:.|.:
  Rat    66 LKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKH 130

  Fly   131 YREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSK-MSAAAAIAAEAGNGK 194
            ||.|:.||.||:|:|||:|:|.|:||.|::.|:.|:|..:.|:|:|:|| .:..|.:..:...|
  Rat   131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKG- 194

  Fly   195 GRGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLP---------DKFQHEMEAVAQ 250
              |...|      |::.|:.||..||:|||||||..:|||||:|         |:.:.|||
  Rat   195 --GPSAG------DVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPSDEGEEEME---- 247

  Fly   251 NGAGHNGS 258
            :|...|||
  Rat   248 DGTVTNGS 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
U2A	NP_610315.1	LRR_9	1..175	CDD:405295	103/173 (60%)
		leucine-rich repeat	22..43	CDD:275380	19/20 (95%)
		leucine-rich repeat	46..65	CDD:275378	11/18 (61%)
		leucine-rich repeat	66..89	CDD:275378	15/22 (68%)
		leucine-rich repeat	90..114	CDD:275378	12/23 (52%)
Snrpa1	NP_001258252.1	LRR_9	1..175	CDD:405295	103/173 (60%)
		leucine-rich repeat	22..43	CDD:275378	19/20 (95%)
		leucine-rich repeat	44..65	CDD:275378	13/20 (65%)
		leucine-rich repeat	66..89	CDD:275378	15/22 (68%)
		leucine-rich repeat	90..114	CDD:275378	12/23 (52%)
		leucine-rich repeat	115..127	CDD:275378	5/11 (45%)