DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCTN4-p62 and Dctn4

DIOPT Version :9

Sequence 1:NP_610311.1 Gene:DCTN4-p62 / 35709 FlyBaseID:FBgn0033206 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001344391.1 Gene:Dctn4 / 67665 MGIID:1914915 Length:467 Species:Mus musculus


Alignment Length:482 Identity:177/482 - (36%)
Similarity:251/482 - (52%) Gaps:89/482 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PINTLFFCRHCPKLRCGFCVTHEIESHFCSNCLENIPSTEARHKKNCCANCFDCPCCQHTLSARA 84
            |::.|:|||:|.:||...||:||::||:|.:||||:||.||:.|||.||||||||.|.||||.||
Mouse    23 PLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA 87

  Fly    85 STVPVVRKSEEAKEPKDGDSKGEATPPVPASSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGV 149
            :::......:.||                        .|.||.|||:|..||||:||||:.|:.|
Mouse    88 TSISTQLPDDPAK------------------------TTMKKAYYLACGFCRWTSRDVGMADKSV 128

  Fly   150 ATGTWPDNECLYQARFNALVEYFQAVVLQEKQE----KLEFMRRKAP---KQHKFPSLTDRTGLT 207
            |:|.|.:.|..:..|.|.|:||:|.:..:||.|    ||...|...|   .||.. .:.|:..|.
Mouse   129 ASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQHTI-HVVDKYSLG 192

  Fly   208 VSLIRRQIG----------WNDKAPKAKAVITPAEATAEVEGLPENIFTEPLNLRNVTTITQRHS 262
            ..|.|.:.|          ..:...:.:..|.||:|.||||.|||:.:|.|:||..|||:.||..
Mouse   193 TRLQRPRAGASISTLAGLSLREGEDQKEVKIEPAQAVAEVEPLPEDYYTRPVNLTEVTTLQQRLL 257

  Fly   263 QPADQPTAVGSLYPQRRSLWIKRSLRCRQCEHNLIKPEYHPTSIKYRIQHFASYHVPEVVMVRCE 327
            ||..||.:...|||:.:.|.||||||||:|||||.|||::|||||::||..|..::|||.::...
Mouse   258 QPDLQPVSASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIP 322

  Fly   328 QPLVAGKSNAILLKLTNPTIYDMTIRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLS 392
            . |...|.:.:||.|||| :.::|...|......||                            .
Mouse   323 N-LRYMKESQVLLTLTNP-VENLTHVTLLECDEGDP----------------------------D 357

  Fly   393 RQNSTREVKRDVIDISNAEIVPLESEFVLNQRDDSKEFDE--DVQLSTEEPKFIVWRKGNKVLLR 455
            ..|||.:|           :|| ..|.:|..:|.:.|:||  :.|...::|..:.:||.|||.:.
Mouse   358 NINSTAKV-----------VVP-PKELILAGKDAAAEYDELAEPQDFQDDPDIVAFRKANKVGIF 410

  Fly   456 LQFTPAEELSGLADVVLGFYMQYTYVN 482
            ::.||..|   ..:|.:.|.|::.:.|
Mouse   411 IKVTPQRE---EGEVTVCFKMKHDFKN 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCTN4-p62NP_610311.1 Dynactin_p62 20..363 CDD:283218 149/359 (42%)
Dctn4NP_001344391.1 Dynactin_p62 23..348 CDD:310244 148/351 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830942
Domainoid 1 1.000 126 1.000 Domainoid score I5403
eggNOG 1 0.900 - - E1_KOG3896
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9430
Inparanoid 1 1.050 275 1.000 Inparanoid score I2942
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58753
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007521
OrthoInspector 1 1.000 - - oto93825
orthoMCL 1 0.900 - - OOG6_104002
Panther 1 1.100 - - LDO PTHR13034
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3688
SonicParanoid 1 1.000 - - X5650
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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