DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdh1 and AT5G15940

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_001331784.1 Gene:AT5G15940 / 831451 AraportID:AT5G15940 Length:365 Species:Arabidopsis thaliana


Alignment Length:351 Identity:115/351 - (32%)
Similarity:172/351 - (49%) Gaps:38/351 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LIMWPATIGVGIYF--LKEYMQGGKFTK-------DTDETGKVFIVTGANTGIGKETALEIARRG 67
            ::.|...: |..||  ||..:.|.|.|.       ....:..:.::|||.:|:||.||..:|.:|
plant    21 VLFWNIAL-VSSYFQLLKARIFGSKSTSISGSINPQNGSSRPICVITGATSGLGKATAFALAEKG 84

  Fly    68 GTVYLACRDMNRCEKARKDIIKETNNQNIFSRELDLSSLDSIRKFVDGFKK------EQPKLHVL 126
            ..|.|..|......:..|:|..:..:..:.|.|.|:||.:||..|.:..::      ..|.:.||
plant    85 FYVVLVGRSSQLLSETLKEIKNKNKDAQLKSFEADMSSFESIFTFKNSLEQWLSDSALHPSIQVL 149

  Fly   127 INNAGVMRCPKTLTKDGYELQLGVNHIGHFLLTNLLLDVLKNS-APSRIVVVSSLAHARGSINVA 190
            :||||::......|.|||:..:..|::|.|.||.|||.:|||| .|||:|.|:|..|....|...
plant   150 VNNAGILATSSRPTIDGYDRMIATNYVGPFFLTKLLLPLLKNSNVPSRVVNVTSFTHHSAFIQKL 214

  Fly   191 DLNS--------EKSYDEGLAYSQSKLANVLFTRELAKRL----EGSGVTVNALHPGVVDTELAR 243
            |.:|        ...|.....|..|||..:||:.||.::|    :.|.|:|.|..||.|.|.:.|
plant   215 DKDSVTGVCFSTSNQYPCARIYEYSKLCLLLFSYELHRQLRLIDDSSHVSVIAADPGFVKTNIMR 279

  Fly   244 NWAFFQTNLVKFFLKPMIWPLLKTPKSGAQTSIYAALD-PELKNISGLYFSDCKPKPVASGAL-- 305
            ....:.|::|  ||...|..||::|:.||::.|.|||. ||   .||.|:...|.:.:.|..:  
plant   280 ELPCYITSMV--FLGFKILGLLQSPEDGAESIIDAALSTPE---TSGAYYFGGKGRTIESSQVSR 339

  Fly   306 DDKVAKFLWAES-EKWTGLDKLEANN 330
            |.|:||.||..| :.:..|..|..:|
plant   340 DPKLAKQLWETSCDLFNDLQLLHHHN 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 102/295 (35%)
AT5G15940NP_001331784.1 Rossmann-fold NAD(P)(+)-binding proteins 64..348 CDD:473865 100/288 (35%)

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