DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdh1 and RDH5

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_002896.2 Gene:RDH5 / 5959 HGNCID:9940 Length:318 Species:Homo sapiens


Alignment Length:237 Identity:49/237 - (20%)
Similarity:82/237 - (34%) Gaps:84/237 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   640 AARVRLEAIAVKRLE-----KYKKAPLEKVAMGRCQSTPGLVETKGRTTIEDMWISPTTAITSAG 699
            |||.....:||.:.|     |:..|||....:|                         :|:.:||
Human    66 AARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLG-------------------------SALLAAG 105

  Fly   700 SMMAPSYPPPA-SSRITSPRSHRGDVCSSRQPQSPGSISPSVHSSEERPRSRTASHLARPQSQPC 763
                |..|.|| :|.:......||.:      ::.||..|...:.:.| ||||.           
Human   106 ----PGMPGPAGASHLPLELQLRGKL------EAAGSGEPGAKAKKGR-RSRTV----------- 148

  Fly   764 RTGPPCGSLTHIESSGATPLLGSHEALEGEIKRLR--ERLHTVESENFTLNAKLAQQQWEVEHRL 826
                    .|.::      |:|..:..|.: |.|.  :|:...||...   ::|..:.|....|:
Human   149 --------FTELQ------LMGLEKRFEKQ-KYLSTPDRIDLAESLGL---SQLQVKTWYQNRRM 195

  Fly   827 --AEIEMQICGASS---------ASSVSQENETEDLERNRES 857
              .:|.:|..|..|         .:|:....:..:.||.:|:
Human   196 KWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKET 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865
RDH5NP_002896.2 type2_17beta_HSD-like_SDR_c 30..306 CDD:187665 49/237 (21%)
Blue background indicates that the domain is not in the aligned region.

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