DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdh1 and CG17121

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_651114.1 Gene:CG17121 / 42721 FlyBaseID:FBgn0039043 Length:361 Species:Drosophila melanogaster


Alignment Length:193 Identity:56/193 - (29%)
Similarity:88/193 - (45%) Gaps:32/193 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IFIDCLLSPLIMWPATIGVGIYFLKEYMQGGKFT---KDTDETGKVFIVTGANTGIGKETALEIA 64
            :.:..||.||::    :.|.:..|.:|:    |.   |:.|.:|||.:|||..:|:|:|..||:|
  Fly    57 VIVFLLLLPLVL----LAVFLKHLLDYL----FALGLKEKDVSGKVALVTGGGSGLGREICLELA 113

  Fly    65 RRGGTVYLACRDMNR--C-------EKARKDIIKETNNQNIFSRELDLSSLDSIRKFVDGFKKEQ 120
            |||  ..||..|:|.  |       .|..:.:.|...|.....|||.|.:..        .:||.
  Fly   114 RRG--CKLAVVDVNSKGCYETVELLSKIPRCVAKAYKNDVSSPRELQLMAAK--------VEKEL 168

  Fly   121 PKLHVLINNAGVMRCPKT--LTKDGYELQLGVNHIGHFLLTNLLLDVLKNSAPSRIVVVSSLA 181
            ..:.:|:|||.:|....|  |..|..:..|.:|...:.:.|...|..:.|.....:|.|::||
  Fly   169 GPVDILVNNASLMPMTSTPSLKSDEIDTILQLNLGSYIMTTKEFLPKMINRKSGHLVAVNALA 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 46/150 (31%)
CG17121NP_651114.1 Rossmann-fold NAD(P)(+)-binding proteins 94..338 CDD:473865 44/148 (30%)

Return to query results.
Submit another query.