DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdh1 and CG8888

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_610724.1 Gene:CG8888 / 36293 FlyBaseID:FBgn0033679 Length:388 Species:Drosophila melanogaster


Alignment Length:242 Identity:50/242 - (20%)
Similarity:91/242 - (37%) Gaps:43/242 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ATIGVGIYFLKEYMQGGKFTKDTDETGKVFIVTGANTGIGKETALEIARRGGTVYLACR-DMNRC 80
            ||:|..:::        .|.| ...:||..::||....:....|.::...|.|||.... .:...
  Fly    78 ATVGAVLFY--------HFVK-VSASGKGVLITGCEAPLAWYLAKKLDDLGFTVYAGFNTPIEES 133

  Fly    81 EKARKDIIKETNNQNIFSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGVMRCPKTLTKDGYE 145
            ::|:  |:||..:..:....||::|..:|.:......:..|  |.......|:.|...:.....|
  Fly   134 DEAK--ILKEVTSGRMKLLHLDVTSEKTILEAARYVSQHLP--HGAEGLWSVVHCAHWIALGELE 194

  Fly   146 --------LQLGVNHIGHFLLTNLLLDVLKNSAPSRIVVVSSLAHARGSINVADLNSEKSYDEGL 202
                    ..|.:|.:|...||.:.|.:::.            ||.|.....:.||...|...|:
  Fly   195 WIPFAVLRKSLDLNLLGSARLTQIFLPLVRR------------AHGRVVFLTSGLNRVPSPVRGI 247

  Fly   203 AYSQSKLANVLFTRELAKRLEGSGVTVNALHPG--------VVDTEL 241
            ..: ::.|...|...|.:.:...||.|:.:..|        :.:|||
  Fly   248 QCA-TQAAVDCFAACLRQEMRTRGVDVSVVAAGEFAPGNGWLNETEL 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 45/216 (21%)
CG8888NP_610724.1 Rossmann-fold NAD(P)(+)-binding proteins 96..380 CDD:473865 44/215 (20%)

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