DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdh1 and rdh14b

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_001040655.1 Gene:rdh14b / 334665 ZFINID:ZDB-GENE-030131-6605 Length:323 Species:Danio rerio


Alignment Length:338 Identity:156/338 - (46%)
Similarity:213/338 - (63%) Gaps:40/338 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LSPLIMWPATIGVGIYF-------------LKEY----MQGGKFTKDTDETGKVFIVTGANTGIG 56
            :|..::..|.:|.|::|             |..|    |:           ||..||||||.|||
Zfish     1 MSAAVVLAAVLGGGVFFIARRIIFRRKALRLMSYPPALMR-----------GKTVIVTGANCGIG 54

  Fly    57 KETALEIARRGGTVYLACRDMNRCEKARKDIIKE--TNNQNIFSRELDLSSLDSIRKFVDGFKKE 119
            |.||.|:.:....|.:||||..|.|.|.:||..:  |:...|..:.|||:||.|:|:|.:...:|
Zfish    55 KATAAELLKLQARVIMACRDRQRAEDAARDIQNQAGTSQGEIVIKHLDLASLQSVRRFCEEVIRE 119

  Fly   120 QPKLHVLINNAGVMRCPKTLTKDGYELQLGVNHIGHFLLTNLLLDVLKNSAPSRIVVVSSLAHAR 184
            :|::.|||||||:.:||.:.|::|:|:||||||:|||||||||||:||.|:|||:|||||..:..
Zfish   120 EPRIDVLINNAGLYQCPYSKTEEGFEMQLGVNHLGHFLLTNLLLDLLKQSSPSRVVVVSSKLYKY 184

  Fly   185 GSINVADLNSEKSYDEGLAYSQSKLANVLFTRELAKRLEGSGVTVNALHPGVVDTELARNWAFFQ 249
            ||||..|||||:||::...||||||||:|||||||:||:|:.||||||.||:|.|.|.|:     
Zfish   185 GSINFEDLNSEQSYNKSFCYSQSKLANLLFTRELARRLDGTEVTVNALTPGIVRTRLGRH----- 244

  Fly   250 TNLVKFFLKPMIWPL----LKTPKSGAQTSIYAALDPELKNISGLYFSDCKPKPVASGALDDKVA 310
            .| :...:||:.|.:    .|:|..||||.:|.|..||::.:||..|::|:.:.:.|.|.||..|
Zfish   245 VN-IPLLIKPLFWLVSWLFFKSPLEGAQTPLYLACSPEVEGVSGKCFANCEEEQLLSKATDDHAA 308

  Fly   311 KFLWAESEKWTGL 323
            |.||..||...||
Zfish   309 KRLWDLSESMVGL 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 144/279 (52%)
rdh14bNP_001040655.1 Rossmann-fold NAD(P)(+)-binding proteins 41..315 CDD:473865 144/279 (52%)

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