DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdh1 and Dhrsx

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_001387848.1 Gene:Dhrsx / 288525 RGDID:1305017 Length:331 Species:Rattus norvegicus


Alignment Length:323 Identity:130/323 - (40%)
Similarity:174/323 - (53%) Gaps:18/323 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MWPA----TIGVGIYF--LKEYMQGGKFTKDTD-ETGKVFIVTGANTGIGKETALEIARRGGTVY 71
            :|.|    .:||.:..  |...::||....:.. :..:|.|||||..|:|..||.::||.|..|.
  Rat     5 LWAALRVYAVGVAVTMVQLLRRLRGGFRPPELPLQADRVAIVTGATRGVGLSTACQLARLGMRVI 69

  Fly    72 LACRDMNRCEKARKDIIKETNNQNIFSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGVMRCP 136
            :|..|.:|..:....|.:|:..::.....|||:||.|:|.||..|:.....||:||||||||..|
  Rat    70 VAGNDEHRGHEVVARIQEESGPESAHFLFLDLASLSSVRSFVRNFEATALPLHLLINNAGVMLDP 134

  Fly   137 KTLTKDGYELQLGVNHIGHFLLTNLLLDVLKNSA----PSRIVVVSSLAHARGSINVADLNSEKS 197
            ...||||:|..:|||.:||||||:|||..|:.|.    .||::.|.|..|..|..:||.|..:..
  Rat   135 SGNTKDGFERHVGVNFLGHFLLTSLLLPALRASGHQGRKSRVITVCSSTHWVGQADVARLLGQSP 199

  Fly   198 YDEGL-AYSQSKLANVLFTRELAKRLE--GSGVTVNALHPGVVDTELARNWAFFQTNLVKFFLKP 259
            ....| ||:.||||..||:..|.:.|.  |..||.|.:.||||||.|..: |.:.|..|:.||. 
  Rat   200 APCALAAYAGSKLALALFSLRLQRLLSALGDPVTANIVDPGVVDTALFAH-AGWGTRAVQRFLG- 262

  Fly   260 MIWPLLKTPKSGAQTSIYAALDPELKNISGLYFSDCKPKPVASGALDDKVAKFLWAESEKWTG 322
              |.|.|||..||.||:|||..|:|:.|.|.|..|.....|...|.|.::...|||||.:.||
  Rat   263 --WLLFKTPDEGAWTSVYAAASPKLEGIGGRYLRDEAEAEVLGAARDLELQGHLWAESCRLTG 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 119/280 (43%)
DhrsxNP_001387848.1 Rossmann-fold NAD(P)(+)-binding proteins 41..315 CDD:473865 116/277 (42%)

Return to query results.
Submit another query.