DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdh1 and F28H7.2

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_505742.1 Gene:F28H7.2 / 185096 WormBaseID:WBGene00009236 Length:284 Species:Caenorhabditis elegans


Alignment Length:223 Identity:59/223 - (26%)
Similarity:92/223 - (41%) Gaps:55/223 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 TGKVFIVTGANTGIGKETALEIARRGGTVYLACRDMNRCEKARK-----------------DIIK 89
            |.||.|:||::.|||:.||..:|..|..|.:..|:..|.|:.:.                 ||.:
 Worm     5 TDKVAIITGSSNGIGQATARLLASEGAKVTVTGRNAERLEETKNILLGAGVPEGNVLVVVGDITQ 69

  Fly    90 ETNNQNIFSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGVMRCPKTLTKDGYELQLGVNHIG 154
            |:..:|:....||        ||        .|:.:|:||||. ..|....|.|....:...|..
 Worm    70 ESVQENLIKSTLD--------KF--------GKIDILVNNAGA-GIPDAQGKSGVNQSIDTYHKT 117

  Fly   155 HFLLTNLLLDVLKNSAPSRIVVVSSLAHARGSI-NVADLNSEKSYDEGLA-------YSQSKLAN 211
            ..|....::::.:.:.|       .||..:|.| |::.:.:      |.|       ||.:|.|.
 Worm   118 FELNVQSVIEMTQKARP-------HLAKTQGEIVNISSIGA------GPAAQVASPYYSIAKAAL 169

  Fly   212 VLFTRELAKRLEGSGVTVNALHPGVVDT 239
            ..:||..|..|...|:.||::.||.|.|
 Worm   170 DQYTRTAAIDLVPEGIRVNSVSPGAVST 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 58/222 (26%)
F28H7.2NP_505742.1 Rossmann-fold NAD(P)(+)-binding proteins 4..266 CDD:473865 59/223 (26%)

Return to query results.
Submit another query.