DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdh1 and si:dkey-94e7.2

DIOPT Version :10

Sequence 1:NP_610310.2 Gene:Rdh1 / 35708 FlyBaseID:FBgn0033205 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_017212892.1 Gene:si:dkey-94e7.2 / 100141353 ZFINID:ZDB-GENE-070912-611 Length:302 Species:Danio rerio


Alignment Length:292 Identity:148/292 - (50%)
Similarity:205/292 - (70%) Gaps:5/292 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GGKFTKDTDETGKVFIVTGANTGIGKETALEIARRGGTVYLACRDMNRCEKARKDIIKETNNQNI 96
            ||:::.:.....|..|:|||||||||||..::|:||..:.:||||:.:.|:|:::|::|:.||||
Zfish    13 GGQWSSNARLDDKTIIITGANTGIGKETTKDLAKRGPRIIMACRDVEKAERAQREIMEESGNQNI 77

  Fly    97 FSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGVMRCPKTLTKDGYELQLGVNHIGHFLLTNL 161
            ..|:||||...|||:|.:....|:..||:||||||||.||.:.|.||:|:|.||||:||||||.|
Zfish    78 VIRKLDLSDTRSIREFAEVINSEERSLHLLINNAGVMMCPYSKTADGFEMQFGVNHLGHFLLTFL 142

  Fly   162 LLDVLKNSAPSRIVVVSSLAHARGSINVADLNSEKSYDEGLAYSQSKLANVLFTRELAKRLEGSG 226
            |:|:||.||||||:.:||:||:.|:|.:.|:|||::|....||.||||||:||||.|||:|:.:|
Zfish   143 LIDLLKRSAPSRIINLSSMAHSWGTITLDDINSERNYHSRRAYGQSKLANILFTRSLAKKLKDTG 207

  Fly   227 VTVNALHPGVVDTELARNWAFFQTNLVKFFLKPMIWPLLKTPKSGAQTSIYAALDPELKNISGLY 291
            ||..|:|||:|.|||.|:     .||....:..::.|..|||..||||:||.|:.|||...||.|
Zfish   208 VTSYAVHPGIVRTELKRH-----MNLGLLIMWKVVRPFTKTPVQGAQTTIYCAVQPELDAESGGY 267

  Fly   292 FSDCKPKPVASGALDDKVAKFLWAESEKWTGL 323
            :|||:|......|.||::|:.||..|....|:
Zfish   268 YSDCRPSRCTRAARDDEMAEKLWELSCNMLGI 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh1NP_610310.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 144/273 (53%)
si:dkey-94e7.2XP_017212892.1 Rossmann-fold NAD(P)(+)-binding proteins 25..293 CDD:473865 144/272 (53%)

Return to query results.
Submit another query.