back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG2065 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001260787.1	Gene:	CG2065 / 35707	FlyBaseID:	FBgn0033204	Length:	300	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	296	Identity:	74/296 - (25%)
Similarity:	120/296 - (40%)	Gaps:	77/296 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly    16 VFIVTGANTGIGKETVLEIAKRG-GTVYMACRDMNRCEKARQDIIRETNNQNIFSR--ELDLSSL 77
            |.:|||||.|||...|.::.::. |.|.:..||.:|..:|    :::...:.:..|  :||:.:.
  Rat     7 VALVTGANKGIGFAIVRDLCRKFLGDVVLTARDESRGHEA----VKQLQTEGLSPRFHQLDIDNP 67

  Fly    78 ESIRKFAAGFKKEQDKLHVLINNAGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHLLLDVLKKTAP 142
            :|||.......:|...|:||:||||:..  :.:....|.:|..|....:|..|.   ||.|:..|
  Rat    68 QSIRALRDFLLQEYGGLNVLVNNAGIAF--KVVDPTPFHIQAEVTMKTNFFGTQ---DVCKELLP 127

  Fly   143 -----SRIVNVSSLVHTQG----------------------------FIKTADL---------NS 165
                 .|:|||||.|..:.                            ||:.|..         ||
  Rat   128 IIKPQGRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMNKFIEDAKKGVHAKEGWPNS 192

  Fly   166 EKSYSRIGAYSQSKLANVLFTRELAKRLEGTGVTTNSLHPGAVDTELSRNWKFLKHPFAQLLLKP 230
            ....::||....|:    ::.|:|.:......:..|:..||.|.|:::       .|.|.
  Rat   193 AYGVTKIGVTVLSR----IYARKLNEERREDKILLNACCPGWVRTDMA-------GPKAT----- 241

  Fly   231 LLWVLFKTPRNGAQTTLY-AALDPALKDVSGLYFSD 265
                  |:|..||:|.:| |.|.|..:...|.:..|
  Rat   242 ------KSPEEGAETPVYLALLPPGAEGPHGQFVQD 271

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.