DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2065 and RDH12

DIOPT Version :10

Sequence 1:NP_610309.1 Gene:CG2065 / 35707 FlyBaseID:FBgn0033204 Length:300 Species:Drosophila melanogaster
Sequence 2:NP_689656.2 Gene:RDH12 / 145226 HGNCID:19977 Length:316 Species:Homo sapiens


Alignment Length:296 Identity:161/296 - (54%)
Similarity:200/296 - (67%) Gaps:14/296 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GGQFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNRCEKARQDIIRETNNQNI 67
            ||.........|||.::|||||||||||..|:|.||..||:||||:.:.|.|..:|..:|.|..:
Human    28 GGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQV 92

  Fly    68 FSRELDLSSLESIRKFAAGFKKEQDKLHVLINNAGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHL 132
            ..|:||||..:|||.||.||..|:.:||:||||||||.||.:.|.||||..|||||:||||||:|
Human    93 LVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYL 157

  Fly   133 LLDVLKKTAPSRIVNVSSLVHTQGFIKTADLNSEKSYSRIGAYSQSKLANVLFTRELAKRLEGTG 197
            ||:.||.:||:|:|||||:.|..|.|...||.|||.|||..||..||||||||||||||||:|||
Human   158 LLERLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYSRGFAYCHSKLANVLFTRELAKRLQGTG 222

  Fly   198 VTTNSLHPGAVDTELSRNWKFLKHPFAQLLLKPLLWVLF----KTPRNGAQTTLYAALDPALKDV 258
            |||.::|||.|.:||.|:        :.||.  |||.||    ||.|.||||:|:.||...|:.:
Human   223 VTTYAVHPGVVRSELVRH--------SSLLC--LLWRLFSPFVKTAREGAQTSLHCALAEGLEPL 277

  Fly   259 SGLYFSDCQPKEVSAAAQDDKTGKFLWAESEKWTGV 294
            ||.|||||:...||..|:::||.:.||..|.:..|:
Human   278 SGKYFSDCKRTWVSPRARNNKTAERLWNVSCELLGI 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2065NP_610309.1 Rossmann-fold NAD(P)(+)-binding proteins 14..288 CDD:473865 157/277 (57%)
RDH12NP_689656.2 retinol-DH_like_SDR_c 39..307 CDD:212495 157/277 (57%)

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