DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2070 and rdh10

DIOPT Version :10

Sequence 1:NP_610308.2 Gene:CG2070 / 35706 FlyBaseID:FBgn0033203 Length:325 Species:Drosophila melanogaster
Sequence 2:NP_001011091.1 Gene:rdh10 / 496504 XenbaseID:XB-GENE-944961 Length:341 Species:Xenopus tropicalis


Alignment Length:248 Identity:60/248 - (24%)
Similarity:100/248 - (40%) Gaps:61/248 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GRVAIVTGCNQGIGKETVLELARRGA--------------------TVYMACRDMKKCENARR-- 85
            |:|.::||...|:|:...||.|||.|                    ::|   |:::..::|||  
 Frog    36 GQVCLITGAGSGLGRLFALEFARRRAQLVLWDINSQSNEETAEMVRSIY---RELEAEDSARRAG 97

  Fly    86 ----EIIKATNNQNIFARQLDLCSMKSIRNFAAGFKREQNKLHILINNAGI------MDCPKMLT 140
                |.::...|..::....|:...:|:.:.|...:||...:::|:||||:      ::||..| 
 Frog    98 NATEEEVQPCCNFQVYTYTCDVGKRESVYSTAERVRREVGDVYLLLNNAGVVSGHHLLECPDEL- 161

  Fly   141 EDGFEMQIGVNHMGHFLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDRKMAYC 205
               .|..:.||...||..|...|..:.......:|.::|....|.....:|            ||
 Frog   162 ---IERTMMVNCHAHFWTTKAFLPKMMEMNHGHIVSVASSLGLFSTAGVED------------YC 211

  Fly   206 QSKLANVLFTRELAKRLSGT---GVTVNALHPGVVNTELFRN-------TPFL 248
            .||...|.|...|:..|...   |:....:.|.:|:|.:||.       .|||
 Frog   212 ASKFGVVGFHESLSHELKAADKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFL 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2070NP_610308.2 Rossmann-fold NAD(P)(+)-binding proteins 43..317 CDD:473865 60/248 (24%)
rdh10NP_001011091.1 17beta-HSDXI-like_SDR_c 38..307 CDD:187598 59/246 (24%)

Return to query results.
Submit another query.