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Protein Alignment CG2070 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001260786.1	Gene:	CG2070 / 35706	FlyBaseID:	FBgn0033203	Length:	325	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	294	Identity:	79/294 - (26%)
Similarity:	122/294 - (41%)	Gaps:	69/294 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    45 VAIVTGCNQGIGKETVLELARRG-ATVYMACRDMKKCENARREIIKATNNQNIFAR--QLDLCSM 106
            ||:|||.|:|||...|.:|.|:. ..|.:..||    |:...|.:|....:.:..|  |||:.:.
  Rat     7 VALVTGANKGIGFAIVRDLCRKFLGDVVLTARD----ESRGHEAVKQLQTEGLSPRFHQLDIDNP 67

  Fly   107 KSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGVNHMGHFLLTLLLLDVLKSSAP 171
            :|||.......:|...|::|:|||||  ..|::....|.:|..|....:|..|   .||.|...|
  Rat    68 QSIRALRDFLLQEYGGLNVLVNNAGI--AFKVVDPTPFHIQAEVTMKTNFFGT---QDVCKELLP 127

  Fly   172 -----SRVV-VLSSIA--------------HRFGRIKRDDL---------NSEKSYDRK-----M 202
                 .||| |.||::              .|...|..::|         :::|....|     .
  Rat   128 IIKPQGRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMNKFIEDAKKGVHAKEGWPNS 192

  Fly   203 AYCQSKLANVLFTRELAKRLS----GTGVTVNALHPGVVNTELFRNTPFLGSWFGKLLIAPIIWI 263
            ||..:|:...:.:|..|::|:    ...:.:||..||.|.|:               :..|..
  Rat   193 AYGVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTD---------------MAGPKA-- 240

  Fly   264 FIKTARNGAQTTLY-AALDPSLEKVSGRYFSDCK 296
             .|:...||:|.:| |.|.|..|...|::..|.|
  Rat   241 -TKSPEEGAETPVYLALLPPGAEGPHGQFVQDKK 273

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.