DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2070 and RDH12

DIOPT Version :9

Sequence 1:NP_001260786.1 Gene:CG2070 / 35706 FlyBaseID:FBgn0033203 Length:325 Species:Drosophila melanogaster
Sequence 2:NP_689656.2 Gene:RDH12 / 145226 HGNCID:19977 Length:316 Species:Homo sapiens


Alignment Length:298 Identity:163/298 - (54%)
Similarity:200/298 - (67%) Gaps:6/298 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LRQYMQGGQFTTKTNETGRVAIVTGCNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKA 90
            :|::..||...|.....|:|.::||.|.||||||..|||.|||.||:||||:.|.|:|..||...
Human    22 IRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVD 86

  Fly    91 TNNQNIFARQLDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGVNHMGH 155
            |.|..:..|:|||...||||.||.||..|:.:|||||||||:|.||...|.||||..:||||:||
Human    87 TKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGH 151

  Fly   156 FLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDRKMAYCQSKLANVLFTRELAK 220
            ||||.|||:.||.|||:|||.:||:||..|:|...||.|||.|.|..|||.||||||||||||||
Human   152 FLLTYLLLERLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYSRGFAYCHSKLANVLFTRELAK 216

  Fly   221 RLSGTGVTVNALHPGVVNTELFRNTPFLGSWFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLE 285
            ||.|||||..|:|||||.:||.|::..|      .|:..:...|:||||.||||:|:.||...||
Human   217 RLQGTGVTTYAVHPGVVRSELVRHSSLL------CLLWRLFSPFVKTAREGAQTSLHCALAEGLE 275

  Fly   286 KVSGRYFSDCKQKHVGSAAQYDDDAQFLWAESEKWTGI 323
            .:||:||||||:..|...|:.:..|:.||..|.:..||
Human   276 PLSGKYFSDCKRTWVSPRARNNKTAERLWNVSCELLGI 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2070NP_001260786.1 PRK06197 41..323 CDD:235737 157/281 (56%)
NADB_Rossmann 43..317 CDD:304358 156/273 (57%)
RDH12NP_689656.2 retinol-DH_like_SDR_c 39..307 CDD:212495 156/273 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1208
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2072
OMA 1 1.010 - - QHG53570
OrthoDB 1 1.010 - - D414554at33208
OrthoFinder 1 1.000 - - FOG0000061
OrthoInspector 1 1.000 - - otm41333
orthoMCL 1 0.900 - - OOG6_100091
Panther 1 1.100 - - O PTHR24320
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1905
SonicParanoid 1 1.000 - - X72
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.770

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