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Protein Alignment CG30491 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001260784.1	Gene:	CG30491 / 35704	FlyBaseID:	FBgn0050491	Length:	331	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	296	Identity:	79/296 - (26%)
Similarity:	125/296 - (42%)	Gaps:	69/296 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 VFIVTGANTGIGKETVREIAKRG-GTVYMACRNLKKCEEAREEIVLETKNKYVYCRQCDLASQES 110
            |.:|||||.|||...||::.::. |.|.:..|:..:..||.::  |:|:.......|.|:.:.:|
  Rat     7 VALVTGANKGIGFAIVRDLCRKFLGDVVLTARDESRGHEAVKQ--LQTEGLSPRFHQLDIDNPQS 69

  Fly   111 IRHFVAAFKREQEHLHVLINNAGVM-----RCPRSLTSDGIELQLGVNHMGHFLLTNLLLDLLKK 170
            ||.......:|...|:||:||||:.     ..|..:.:   |:.:..|..|...:...||.::|.
  Rat    70 IRALRDFLLQEYGGLNVLVNNAGIAFKVVDPTPFHIQA---EVTMKTNFFGTQDVCKELLPIIKP 131

  Fly   171 SSPSRIVNVSSLAHTRG-------------------EINTGDLNSDKSYDEGK------------ 204
            .  .|:|||||....|.                   |...|.:|  |..::.|
  Rat   132 Q--GRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMN--KFIEDAKKGVHAKEGWPNS 192

  Fly   205 AYSQSKLANVLFTRELAKRL----EGTNVTANALHPGVVDTEIIRHMGFFNNFFAGLFVKPLFWP 265
            ||..:|:...:.:|..|::|    ....:..||..||.|.|::           ||    |   .
  Rat   193 AYGVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTDM-----------AG----P---K 239

  Fly   266 FVKTPRNGAQTSLYVA-LDPELEKVTGQYFSDCKLK 300
            ..|:|..||:|.:|:| |.|..|...||:..|.|::
  Rat   240 ATKSPEEGAETPVYLALLPPGAEGPHGQFVQDKKVE 275

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.