DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17985 and AT1G55000

DIOPT Version :9

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_001031192.1 Gene:AT1G55000 / 841942 AraportID:AT1G55000 Length:221 Species:Arabidopsis thaliana


Alignment Length:204 Identity:41/204 - (20%)
Similarity:84/204 - (41%) Gaps:47/204 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PDDVEDIFARPA----YDDDEFEDLLPLARRPNGHARLGRYENTLEVKVQEGDTLQALALRFHSS 77
            |..::::..|||    :.|:                  |.::..:..::..||::.:||:::...
plant    48 PWRIKELVGRPASVSFWRDN------------------GIWKFAISHRICRGDSVTSLAVKYAVQ 94

  Fly    78 VADIKRLNKIDRENEIHAHRVIRIPVTVHNVL--------LGNGGLEALPAVHRSGNNSPRHNIE 134
            |.||||||.:..::.|::...:.||::...:|        |.......:..::..|  :|:   .
plant    95 VMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEG--APK---R 154

  Fly   135 REPAPERNPLEDARQMLD-ERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPN---DEANME 195
            .:|.|..|  :.:....| :|.|:.::..|..||      ...|..:...|:|.|.   .|.:.:
plant   155 EQPVPGTN--QQSNLSADGKRRLIESLRRSMQVD------DGTALYYLAIAEGDPRSALSEFSAD 211

  Fly   196 QPYEENAAL 204
            ..:|..|.|
plant   212 LRWERQAGL 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:279777 12/42 (29%)
LysM <60..105 CDD:224306 14/44 (32%)
AT1G55000NP_001031192.1 F-box-like 9..40 CDD:403981
LysM 74..118 CDD:212030 12/43 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002722
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR20932
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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