DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17985 and Lysmd4

DIOPT Version :10

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_001388303.1 Gene:Lysmd4 / 681647 RGDID:1592887 Length:310 Species:Rattus norvegicus


Alignment Length:247 Identity:60/247 - (24%)
Similarity:100/247 - (40%) Gaps:65/247 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DDEFEDLLPLARRPNGHARLGRYENT-----------LEVKVQEGDTLQALALRFHSSVADIKRL 84
            |...|:...:..||.|..   |.:|:           |:.::.:.|:|..|||::...|||||:.
  Rat    54 DSSEEESHQVVLRPRGKE---RQKNSSQPPGTGTMVLLQRELAQEDSLNKLALQYGCKVADIKKA 115

  Fly    85 NKIDRENEIHAHRVIRIPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQ 149
            |...||.:::|.:.|:|||..|.:|. ....|.:|.    |.:|....:.....||..       
  Rat   116 NNFIREQDLYALKSIKIPVRNHGILT-ETHQELMPL----GASSSETRVTLVELPEDG------- 168

  Fly   150 MLDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEENAALLNHMVDRH-- 212
                       :||||.......|     :|::|.     || |:|:..:.:..        |  
  Rat   169 -----------DASGATAQGNQLT-----EFFKGI-----DE-NIERAVQSDVF--------HSD 203

  Fly   213 -----APLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCVVIPLVYVIY 259
                 ||....:|.....|.|  |:||.:.|...:..:|.:.:|:|:.|::|
  Rat   204 GCCVEAPDQPLLPITQKPAAD--GADCGIQWWNAVFLMLLIGIVLPVFYLVY 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:396179 15/42 (36%)
Lysmd4NP_001388303.1 LysM 94..132 CDD:197609 15/37 (41%)

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