DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17985 and lysmd2

DIOPT Version :10

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_001003507.1 Gene:lysmd2 / 445113 ZFINID:ZDB-GENE-040801-250 Length:208 Species:Danio rerio


Alignment Length:207 Identity:50/207 - (24%)
Similarity:82/207 - (39%) Gaps:46/207 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 EFEDLLPLARRPNGHARLGR---------------------------YENT-----------LEV 59
            ||..:||..|...|..|.|:                           |.:|           :|.
Zfish     3 EFSPVLPPLRDDGGGGRYGQPLFPRSRSGSESDSELSQSLARTKTRSYGSTASVTAPLGEKYIEH 67

  Fly    60 KVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIRIPVTVHNVLLGNG-GLEALPAVHR 123
            :|.:|:|||.:||::..::..|||:||:...:.|.....:.|||......|.|| .||:..:...
Zfish    68 RVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPVKSEKRSLFNGLSLESPDSEGN 132

  Fly   124 SGNNSP--RHNIER-EPAPERN-PLEDARQMLDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGA 184
            :...||  ..:::. .|.||.: |..:.|.:..|.|  :|.:....:|.:...:..||.:..|..
Zfish   133 TPQESPCVSQDVDAPSPPPEPSVPEPNTRPVQAEEL--SAKDYLHRLDLQIKQSKLAARKLKEDG 195

  Fly   185 QGAPNDEANMEQ 196
             |...|:.|..|
Zfish   196 -GREEDDTNSYQ 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:396179 13/42 (31%)
lysmd2NP_001003507.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..54 9/50 (18%)
LysM 65..109 CDD:212030 14/43 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..169 11/48 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..208 7/21 (33%)

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