DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17985 and Lysmd3

DIOPT Version :10

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_001009698.1 Gene:Lysmd3 / 315923 RGDID:1308805 Length:300 Species:Rattus norvegicus


Alignment Length:252 Identity:63/252 - (25%)
Similarity:102/252 - (40%) Gaps:71/252 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DEFEDLLPLARRPNGHARLGRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAH 96
            |..:|::.|.:                 .:||||||.|:||::..:||||||:|.:..:.:..|.
  Rat    57 DRLDDIVILTK-----------------DIQEGDTLNAVALQYCCTVADIKRVNNLISDQDFFAL 104

  Fly    97 RVIRIPV--------TVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQMLDE 153
            |.|:|||        |:|            |...|...:.|       |.|          ...|
  Rat   105 RSIKIPVKRFSSLTETLH------------PLKGRQVLHPP-------PVP----------YFQE 140

  Fly   154 RLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEENAALLNHMVDR-HAPLVR 217
            :..|.|        ::.||:|.:||.|.:................:||   ||.:|.. .|..||
  Rat   141 QDTVPA--------NDSPSSSESAGSFLKEVDRDIEQIVKCTDTKKEN---LNEVVSALTAQQVR 194

  Fly   218 PIP-GPSLSAID-WSGSDCDLSWICLLIFILALCVVIPLVYVIY---LAEHPHHNHS 269
            ..| ..|:...| :.|:|..:.|...::.:|.:.::.|:.|::|   ||:....:||
  Rat   195 FEPDNKSVHRKDPYYGADWGMGWWTAVVIMLIVGIITPVFYLLYYEILAKVDVSHHS 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:396179 19/42 (45%)
Lysmd3NP_001009698.1 LysM <69..112 CDD:440998 21/42 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..157 7/38 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..300
Blue background indicates that the domain is not in the aligned region.

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