DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17985 and Lysmd1

DIOPT Version :10

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_694761.1 Gene:Lysmd1 / 217779 MGIID:1919409 Length:226 Species:Mus musculus


Alignment Length:193 Identity:43/193 - (22%)
Similarity:75/193 - (38%) Gaps:49/193 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 ENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIRIPVTVHNVLLGNG----- 113
            |..||.:::.||||..|||::..::..|||.|::...:.|...:.:.||:......|.||     
Mouse    37 ERRLEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILSEPRDLFNGLDSEE 101

  Fly   114 ---GLEAL-PAVHRSGNNS------------------PRHNIEREPAPERNPLEDARQMLDERLL 156
               |.|.: |:....|::|                  |.|.....|:.:.: ..|..:.||.::.
Mouse   102 ENDGEEEVRPSKDEIGSSSGRRKNRGSGSGRPNGTGLPPHQETSTPSHDLS-ASDFLKKLDSQIS 165

  Fly   157 VAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANM--EQPYEENAALLNHMVDRHAPLVR 217
            :              |...||.:..:|..|.|.::..:  ..|..:..|:|..:     ||.|
Mouse   166 L--------------SKKAAAQKLRKGESGVPEEDTGLYPSSPRMQQRAVLGPV-----PLTR 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:396179 12/42 (29%)
Lysmd1NP_694761.1 LysM 42..84 CDD:212030 12/41 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 95..156 10/61 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 170..226 11/45 (24%)

Return to query results.
Submit another query.