DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17985 and LYSMD3

DIOPT Version :10

Sequence 1:NP_610305.1 Gene:CG17985 / 35702 FlyBaseID:FBgn0033199 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_938014.1 Gene:LYSMD3 / 116068 HGNCID:26969 Length:306 Species:Homo sapiens


Alignment Length:259 Identity:63/259 - (24%)
Similarity:104/259 - (40%) Gaps:84/259 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DEFEDLLPLARRPNGHARLGRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAH 96
            |..:|::.|.:                 .:||||||.|:||::..:||||||:|.:..:.:..|.
Human    57 DRLDDIIVLTK-----------------DIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFAL 104

  Fly    97 RVIRIPVTVHNVLLGNGGLEAL-PAVHRSGNNSPRHNIEREPAPERNPLEDARQMLDERLLVAAV 160
            |.|:|||...:.|     .|.| |.   .|..:.||:              :.|...|:..:...
Human   105 RSIKIPVKKFSSL-----TETLCPP---KGRQTSRHS--------------SVQYSSEQQEILPA 147

  Fly   161 NASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYE------ENAALLNHMVD-------RH 212
            |.|.|.       |.:||.|.:..      :.::||..:      ||   ||.:|.       |.
Human   148 NDSLAY-------SDSAGSFLKEV------DRDIEQIVKCTDNKREN---LNEVVSALTAQQMRF 196

  Fly   213 AP----LVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCVVIPLVYVIY---LAEHPHHNHS 269
            .|    ..|..|        :.|:|..:.|...::.:|.:.::.|:.|::|   ||:....:||
Human   197 EPDNKNTQRKDP--------YYGADWGIGWWTAVVIMLIVGIITPVFYLLYYEILAKVDVSHHS 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17985NP_610305.1 LysM 59..102 CDD:396179 19/42 (45%)
LYSMD3NP_938014.1 LysM <69..112 CDD:440998 21/42 (50%)

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