DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and RPT5B

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_172384.1 Gene:RPT5B / 837431 AraportID:AT1G09100 Length:423 Species:Arabidopsis thaliana


Alignment Length:409 Identity:171/409 - (41%)
Similarity:244/409 - (59%) Gaps:38/409 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 EDIQKAVKQV-NELTGIKESD--TGLAPPALWDLAADKQILQNEQ---------PLQVARCTKII 102
            :||.:|.:.: ||:..:||..  |.|      ||.:.|:.::..|         |..|....:|:
plant    22 DDIGRASRLLANEIRILKEESQRTNL------DLESVKEKIKENQEKIKLNKQLPYLVGNIVEIL 80

  Fly   103 ------NADSDDPKYIINVKQFAKFVV-----------DLADSVAPTDIEEGMRVGVDRNKYQIH 150
                  :|:.|.....::.::..|.||           .:...|.|..::.|..|||:::.|.|.
plant    81 EMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLIL 145

  Fly   151 IPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLF 215
            ..||.:.|..|..|:|::||...|:|:||.::||::|.|.:..|:.|.|:|..|||.|||||||:
plant   146 DTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLY 210

  Fly   216 GPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAI 280
            |||||||||.|||.|.:|:|.|:::.|.:|||.::|:||::||:.|.:|:.|..|:||.||||||
plant   211 GPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAI 275

  Fly   281 GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGL 345
            |..|||....||.|||||||||:||||||.....|||:.||||.|.|||||||.||||||:||..
plant   276 GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340

  Fly   346 PDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFL 410
            |.::.|..|.:||:|.|:|..|:.|:.|||...:..||::::||.||||.|:|........:||.
plant   341 PTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405

  Fly   411 EAVKKVIKSYAKFSATPRY 429
            |.   :|:..||..|:..|
plant   406 EG---IIQVQAKKKASLNY 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 171/409 (42%)
RPT5BNP_172384.1 RPT1 28..416 CDD:224143 166/396 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D571919at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.