Protein Alignment Rpt1 and Psmc5

DIOPT Version :9

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_112411.1
• Gene: Psmc5 / 81827
• RGDID: 708376
• Length: 406
• Species: Rattus norvegicus
• Alignment Length: 414
• Identity: 196/414 - (47%)
• Similarity: 261/414 - (63%)
• Gaps: 35/414 - (8%)

  Fly    15 DEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEE----------DIQKAVKQVNELTGIKESD 69
            |..|..|::....|.       |..||:  :..|||          ::::...|.|||.
  Rat     4 DGPEQMELEEGKAGS-------GLRQYY--LSKIEELQLIVNDKSQNLRRLQAQRNELN------ 53

  Fly    70 TGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDI 134
               |...|  |..:.|:|| ||...|....:.:    |..|.::.|....|||||:..::...|:
  Rat    54 ---AKVRL--LREELQLLQ-EQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDV 108

  Fly   135 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199
            ....||.:..:.|.:|..||.|:||.|::|.||..||.||..:||..:||::::||:|.|:.|||
  Rat   109 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173

  Fly   200 KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            .|..|||..||||||:|||||||||.|||||:.||..||||.|||||||::|||||||||||.||
  Rat   174 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA 238

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            |.....:||.||||:||.:|.:.|:|||:|||||||||:||||||:...||||:|||||.|.||.
  Rat   239 REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 303

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGM 394
            ||:||||:|||:||..|:::.|..|.|||:|.|::.|.|....:|.|.|.::|||::.|||||||
  Rat   304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368

  Fly   395 FAIRARRKVATEKDFLEAVKKVIK 418
            :|:|.||...|::||..||.||::
  Rat   369 YALRERRVHVTQEDFEMAVAKVMQ 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	RPT1	27..430	CDD:224143	193/402 (48%)
Psmc5	NP_112411.1	RPT1	4..404	CDD:224143	196/414 (47%)
		May mediate interaction with PRPF9. /evidence=ECO:0000250|UniProtKB:P62196	186..406		129/207 (62%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0554
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820