DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and RPT2b

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_179604.1 Gene:RPT2b / 816533 AraportID:AT2G20140 Length:443 Species:Arabidopsis thaliana


Alignment Length:449 Identity:170/449 - (37%)
Similarity:255/449 - (56%) Gaps:58/449 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PDYLGDDQRKVKHDEKEDK--EIKSLDEGDIELLKTYGQSQY----------HKSIKSIEEDIQK 54
            |..:|..|||.|..|...:  .:....:..:.|||......|          .:.:|..||..::
plant    33 PARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEE 97

  Fly    55 AVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIIN------ADSDDPKYII 113
            ...:|::|.|                          .|:.|....::|:      :.|..|:|.:
plant    98 DRSKVDDLRG--------------------------TPMSVGNLEELIDENHAIVSSSVGPEYYV 136

  Fly   114 NVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVG 178
            .:..|          |....:|.|..:.:......:...|..::||.|::|:||..|..:|:|:|
plant   137 GILSF----------VDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIG 191

  Fly   179 GCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 243
            |.:.||::::|.||.||.|||.:.::||:|||||:|:|.|||||||.|:||||.|.|.|:||:||
plant   192 GLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 256

  Fly   244 ELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG 308
            ||:|||:|:|.::|||||.:|......::|.|||||:|..|:|..:||:.|:|||||||:|||||
plant   257 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDG 321

  Fly   309 FDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLL 373
            ||.||::||::||||.::|||||:||||:|||:||.|||...|..||:||...|::..|:..:..
plant   322 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEF 386

  Fly   374 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPR--YM 430
            .......:||:|:::|||||:.|:|.||...|..||.:|.:||:  :.|....|.  ||
plant   387 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVM--FKKKEGVPEGLYM 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 151/349 (43%)
RPT2bNP_179604.1 PTZ00361 7..443 CDD:185575 168/447 (38%)

Return to query results.
Submit another query.