DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and yme1l1a

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:XP_005162918.2 Gene:yme1l1a / 793098 ZFINID:ZDB-GENE-091113-41 Length:729 Species:Danio rerio


Alignment Length:406 Identity:123/406 - (30%)
Similarity:204/406 - (50%) Gaps:52/406 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KTYGQSQYHKSIKS--IEEDIQKAVKQVNELTGI---KESDTGLAPPALWDLAADKQILQNEQP- 92
            ||..:|::.:|...  :|.|....|    .:.|:   :::|||         :.::.:.||..| 
Zfish   159 KTMSKSRHLRSSSEGPVEADNYTPV----FMKGLIMKEKTDTG---------SLEQLLKQNNLPE 210

  Fly    93 --------------LQVARCTKIINADSDDPKYIINVKQFAKFVVDLAD--SVAPTDIEEGMRVG 141
                          ::....||.........:.||       ||:.||.  .|:.:....|....
Zfish   211 SHQDAFKTGFTEGFMKAQALTKRTQDSVKRTRLII-------FVLLLAGIYGVSRSPFFSGKGSF 268

  Fly   142 VDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGI 206
            .|..:::....|...:||      |:.| ::|:..|.|.:|...:|::|||. |.:|:||..||.
Zfish   269 SDTVRFRTTSGLDSSVDP------VQMK-NITFEHVKGVEEAKNELQDVVEF-LRNPQKFTVLGG 325

  Fly   207 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACL 271
            :.|||:||.|||||||||.|||||...|..|....|||..:.:||.||..:|.||:.|::...|:
Zfish   326 KLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCV 390

  Fly   272 IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
            ||.||:|::||.|.:......:  ::|:.:|:.::|||.|...:.|:.|||..:.||.||:||||
Zfish   391 IFIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGR 453

  Fly   337 LDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARR 401
            .|.:|...:||..||:.|.:.:.:.:.|:..|..:::||.....:|||:.::..:|.:.|....:
Zfish   454 FDMQVTVPIPDVKGRTEILEWYLKKIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGK 518

  Fly   402 KVATEKDFLEAVKKVI 417
            .:.|.|:...|..|::
Zfish   519 DLVTMKELEFAKDKIL 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 112/347 (32%)
yme1l1aXP_005162918.2 None

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