DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and PSMC2

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_002794.1 Gene:PSMC2 / 5701 HGNCID:9548 Length:433 Species:Homo sapiens


Alignment Length:433 Identity:397/433 - (91%)
Similarity:418/433 - (96%) Gaps:0/433 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPDYLGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELTGI 65
            ||||||.||||.|.|||:||.|::||||||.||||||||.|.:.||.:|:|||:.:|::||||||
Human     1 MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGI 65

  Fly    66 KESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVA 130
            ||||||||||||||||||||.||:|||||||||||||||||:||||||||||||||||||:|.||
Human    66 KESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVA 130

  Fly   131 PTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPL 195
            |||||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||
Human   131 PTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 195

  Fly   196 LHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVREL 260
            ||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Human   196 LHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVREL 260

  Fly   261 FEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 325
            |||||:|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Human   261 FEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 325

  Fly   326 TLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCT 390
            |||||||||||||||:||.|||.:||:||||||||||||||||||:|||||||||||||||||||
Human   326 TLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCT 390

  Fly   391 EAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPRYMTYN 433
            ||||||||||||:||||||||||.|||||||||||||||||||
Human   391 EAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 373/402 (93%)
PSMC2NP_002794.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22 16/20 (80%)
RPT1 23..430 CDD:224143 375/406 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165145076
Domainoid 1 1.000 382 1.000 Domainoid score I835
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2096
Inparanoid 1 1.050 808 1.000 Inparanoid score I492
Isobase 1 0.950 - 0 Normalized mean entropy S70
OMA 1 1.010 - - QHG54011
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0004356
OrthoInspector 1 1.000 - - oto91843
orthoMCL 1 0.900 - - OOG6_101899
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3079
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1413.860

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