DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and psmc3

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001006786.1 Gene:psmc3 / 448481 XenbaseID:XB-GENE-1009848 Length:423 Species:Xenopus tropicalis


Alignment Length:440 Identity:178/440 - (40%)
Similarity:257/440 - (58%) Gaps:42/440 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDDQRKVKHDE------KEDKEIKSLDEGDIELLK-TYGQSQYHKSIKSIEEDIQ------K 54
            |.||::..|:..:|      ..|.|||.:..   |:|: |:........||...|.|:      .
 Frog    11 DGLGEEVLKMSTEEIIQRTRLLDSEIKIMKS---EVLRVTHELQAMRDKIKENSEKIKVNKTLPY 72

  Fly    55 AVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFA 119
            .|..|.||..:..:|.. ...|..||.:.::          .:|..|  ..|....|.:.|..  
 Frog    73 LVSNVIELLDVDPNDQE-EDGANIDLDSQRK----------GKCAVI--KTSTRQTYFLPVIG-- 122

  Fly   120 KFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQI 184
              :|| |:.:.|.|:     |||:::.|.|...||.:.|..|..|:|:::|...|||:||..:||
 Frog   123 --LVD-AEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQI 179

  Fly   185 EKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249
            ::|.|.:..|:.|.|||.||||:||||||::|||||||||.|||.|.:|.|.|:::.|.:|||.:
 Frog   180 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 244

  Fly   250 VGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 314
            :|:||::||:.|.:|:.|...:||.||:||||..|||....||.|||||||||:||||||.|...
 Frog   245 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQ 309

  Fly   315 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPN 379
            :||:.||||.|.|||||:|.||||||:||.:|:::.|:.|.:||:|.|:|..|:.::.|||...:
 Frog   310 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDD 374

  Fly   380 STGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPRY 429
            ..||:.::||.||||.|:|......|.:|::|.:.:|   .||..|..:|
 Frog   375 FNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV---QAKKKANLQY 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 154/342 (45%)
psmc3NP_001006786.1 PRK03992 23..416 CDD:179699 172/421 (41%)

Return to query results.
Submit another query.