DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Rpt5

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster


Alignment Length:440 Identity:179/440 - (40%)
Similarity:255/440 - (57%) Gaps:46/440 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGDDQRKVKHDE------KEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQ------KAVK 57
            ||::..::..||      ..|.|||.:....|.:  |:.....::.||...|.|:      ..|.
  Fly    18 LGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIRI--THEIQAQNEKIKDNTEKIKVNKTLPYLVS 80

  Fly    58 QVNELTGI---KESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFA 119
            .|.||..:   :|.|.|           ...:|.|::.   .:|..|  ..|....|.:.|..  
  Fly    81 NVIELLDVDPQEEEDDG-----------SVTVLDNQRK---GKCAVI--KTSTRQAYFLPVIG-- 127

  Fly   120 KFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQI 184
              :|| |:.:.|.|:     |||:::.|.|...||.:.|..|..|:|:::|...|||:||..:||
  Fly   128 --LVD-AEKLKPGDL-----VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQI 184

  Fly   185 EKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249
            ::|.|.|..|:.|.|||.||||.|||||||:|||||||||.|||.|.:|.:.|:::.|.:|||.:
  Fly   185 QELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 249

  Fly   250 VGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 314
            :|:||::||:.|.:|:.|...:||.||:||||..|||....||.|||||||||:||||||....:
  Fly   250 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD 314

  Fly   315 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPN 379
            |||:.||||.|.|||||:|.||||||:||..|:::.|:.|.:||:|.|:|..|:.|:.|:|...:
  Fly   315 IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDD 379

  Fly   380 STGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPRY 429
            ..||:.::||.||||.|:|......|.:||::|:.:|   .||..|...|
  Fly   380 FNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEV---QAKKKANLNY 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 171/412 (42%)
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 173/418 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445434
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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